SecReT6
I. Summary
SecReT6 ID211 insolico
StrainPseudomonas putida F1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009512
Location2396601..2414329
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pput_21142391817..2392695 [-], 879148547335hypothetical protein 
2Pput_21152392698..2395688 [-], 2991148547336hypothetical protein 
3Pput_21162395681..2396604 [-], 924148547337hypothetical protein 
4Pput_21172396601..2398769 [-], 2169148547338Rhs element Vgr protein  TssI
5Pput_21182398843..2399358 [-], 516148547339hypothetical protein  TssD
6Pput_21192399491..2400360 [-], 870148547340hypothetical protein  TssL
7Pput_21202400362..2401699 [-], 1338148547341hypothetical protein  TssK
8Pput_21212401755..2402552 [-], 798148547342hypothetical protein  TssJ
9Pput_21222402549..2403118 [-], 570148547343FHA domain-containing protein  Fha
10Pput_21232403115..2404131 [-], 1017148547344hypothetical protein  TssG
11Pput_21242404095..2405861 [-], 1767148547345hypothetical protein  TssF
12Pput_21252405865..2406275 [-], 411148547346GPW/gp25 family protein  TssE
13Pput_21262406272..2407762 [-], 1491148547347hypothetical protein  TssC
14Pput_21272407780..2408283 [-], 504148547348hypothetical protein  TssB
15Pput_21282408611..2409261 [+], 651148547349hypothetical protein 
16Pput_21292409249..2410712 [+], 1464148547350ImpA domain-containing protein  TssA
17Pput_21302410709..2414329 [+], 3621148547351ImcF domain-containing protein  TssM
18Pput_21312414407..2416260 [-], 1854148547352ABC transporter-like protein  TagT
19Pput_21322416563..2418053 [+], 1491148547353hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Pput_21182398843..2399358 [-], 516148547339hypothetical protein ECA2866

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation