SecReT6
I. Summary
SecReT6 ID212 insolico
StrainPseudomonas putida F1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009512
Location2986840..3011455
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pput_26162985743..2986210 [-], 468148547833hypothetical protein 
2Pput_26172986245..2986829 [-], 585148547834hypothetical protein 
3Pput_26182986840..2988696 [-], 1857148547835Rhs element Vgr protein  TssI
4Pput_26202989609..2990160 [+], 552148547836hypothetical protein 
5Pput_26212990739..2991503 [+], 765148547837hypothetical protein 
6Pput_26222991568..2992107 [+], 540148547838hypothetical protein  TssB
7Pput_26232992122..2993624 [+], 1503148547839hypothetical protein  TssC
8Pput_26242993651..2994133 [+], 483148547840GPW/gp25 family protein  TssE
9Pput_26252994133..2995953 [+], 1821148547841hypothetical protein  TssF
10Pput_26262995917..2996987 [+], 1071148547842hypothetical protein  TssG
11Pput_26272996984..2999581 [+], 2598148547843ATPase  TssH
12Pput_26282999606..3000328 [+], 723148547844hypothetical protein  TssJ
13Pput_26293000325..3001668 [+], 1344148547845hypothetical protein  TssK
14Pput_26303001665..3002381 [+], 717148547846hypothetical protein  TssL
15Pput_26313002412..3006215 [+], 3804148547847ImcF domain-containing protein  TssM
16Pput_26323006212..3007120 [+], 909148547848hypothetical protein 
17Pput_26333007117..3009612 [+], 2496148547849OmpA/MotB domain-containing protein  TssM
18Pput_26343009756..3010274 [+], 519148547850hypothetical protein  TssD
19Pput_26353010370..3011455 [+], 1086148547851ImpA domain-containing protein  TssA
20Pput_26363011623..3014139 [+], 2517148547852excinuclease ABC subunit A 
21Pput_26373014224..3015873 [+], 1650148547853major facilitator superfamily transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Pput_26343009756..3010274 [+], 519148547850hypothetical protein Psyr_4965

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation