SecReT6
I. Summary
SecReT6 ID214 insolico
StrainKlebsiella pneumoniae subsp. pneumoniae MGH 78578
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009648
Location2462169..2492492
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000110001
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPN_02241 (ychH)2458286..2458561 [-], 276152970788hypothetical protein 
2KPN_02242 (pth)2458834..2459418 [+], 585152970789peptidyl-tRNA hydrolase 
3KPN_02243 (ychF)2459536..2460627 [+], 1092152970790GTP-dependent nucleic acid-binding protein EngD 
4KPN_022442460709..2461038 [-], 330152970791hypothetical protein 
5KPN_022452461122..2461631 [-], 510152970792hypothetical protein 
6KPN_022462461639..2461959 [+], 321152970793hypothetical protein 
7KPN_022472462169..2463584 [-], 1416152970794hypothetical protein  TssA
8KPN_022482464050..2464586 [-], 537152970795hypothetical protein  TssJ
9KPN_022492464567..2465613 [-], 1047152970796hypothetical protein  TssG
10KPN_022502465613..2467376 [-], 1764152970797hypothetical protein  TssF
11KPN_022512467510..2470920 [-], 3411152970798hypothetical protein  TssM
12KPN_022522470904..2472061 [-], 1158152970799hypothetical protein 
13KPN_022532472065..2472331 [-], 267152970800hypothetical protein  PAAR
14KPN_022542472629..2472892 [-], 264152970801hypothetical protein 
15KPN_022552473075..2473419 [-], 345152970802hypothetical protein 
16KPN_022562473552..2474445 [-], 894152970803hypothetical protein 
17KPN_022572474629..2475522 [-], 894152970804sulfatase modifying factor 1 -like protein 
18KPN_022582475544..2475849 [-], 306152970805hypothetical protein 
19KPN_022592475873..2477063 [-], 1191152970806hypothetical protein 
20KPN_022602477087..2477269 [-], 183152970807hypothetical protein 
21KPN_022612477363..2477869 [-], 507152970808hypothetical protein 
22KPN_022622477866..2478375 [-], 510152970809hypothetical protein 
23KPN_022632478376..2479731 [-], 1356152970810hypothetical protein 
24KPN_022642480025..2480534 [-], 510152970811hypothetical protein 
25KPN_022652480524..2480676 [-], 153152970812hypothetical protein 
26KPN_022662480771..2481277 [-], 507152970813hypothetical protein 
27KPN_022672481274..2481783 [-], 510152970814hypothetical protein 
28KPN_022682481784..2483139 [-], 1356152970815hypothetical protein 
29KPN_022692483433..2483630 [-], 198152970816hypothetical protein 
30KPN_022702483617..2483943 [-], 327152970817hypothetical protein 
31KPN_022712483940..2484449 [-], 510152970818hypothetical protein 
32KPN_022722484450..2485832 [-], 1383152970819hypothetical protein 
33KPN_022732485829..2488315 [-], 2487152970820hypothetical protein  TssI
34KPN_022742488774..2490471 [-], 1698152970821hypothetical protein  TagL
35KPN_022752491125..2492492 [-], 1368152970822hypothetical protein  TssK
36KPN_022762492703..2492948 [-], 246152970823hypothetical protein 
37KPN_022772493386..2494018 [+], 633152970824putative nucleoprotein/polynucleotide-associated enzyme 
38KPN_022782494044..2494835 [-], 792152970825putative ribosomal large subunit pseudouridine synthase A 
39KPN_022792494933..2495415 [+], 483152970826cold shock protein E 
40KPN_022802495525..2496424 [+], 900152970827LysR family transcriptional regulator 
41KPN_022812496399..2497208 [-], 810152970828molybdate ABC transporter periplasmic substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Sarris PF et al. (2011). Distribution of the putative type VI secretion system core genes in Klebsiella spp. Infect Genet Evol. 11(1):157-66. [PudMed:20932940] in_silico
 
in_silico This literature contains bioinformatics investigation