SecReT6
I. Summary
SecReT6 ID218 insolico
StrainPseudomonas aeruginosa PA7
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009656
Location2968090..2987968
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSPA7_28842964795..2966000 [-], 1206152988095hypothetical protein 
2PSPA7_28852966206..2966847 [-], 642152985807putative transcriptional regulator 
3PSPA7_28862967075..2967518 [+], 444152989416hypothetical protein 
4PSPA7_28872967543..2968079 [-], 537152984977hypothetical protein 
5PSPA7_28882968090..2970096 [-], 2007152985590hypothetical protein  TssI
6PSPA7_28892970153..2971121 [-], 969152984896endonuclease/exonuclease/phosphatase family protein 
7PSPA7_28902971838..2974387 [-], 2550152984171type VI secretion ATPase  TssH
8PSPA7_28912974389..2975405 [-], 1017152986315hypothetical protein  TssG
9PSPA7_28922975369..2977162 [-], 1794152985461hypothetical protein  TssF
10PSPA7_28932977146..2977571 [-], 426152988298hypothetical protein  TssE
11PSPA7_28942977584..2978081 [-], 498152989665hypothetical protein  TssD
12PSPA7_28952978155..2979639 [-], 1485152988660hypothetical protein  TssC
13PSPA7_28962979662..2980207 [-], 546152983560hypothetical protein  TssB
14PSPA7_28982980416..2980892 [+], 477152986824hypothetical protein 
15PSPA7_28972980889..2981011 [-], 123152987629hypothetical protein 
16PSPA7_28992980991..2982283 [+], 1293152985666hypothetical protein  TssK
17PSPA7_29002982301..2983059 [+], 759152986312hypothetical protein  TssL
18PSPA7_29012983056..2986871 [+], 3816152989492hypothetical protein  TssM
19PSPA7_29022986868..2987968 [+], 1101152984945hypothetical protein  TssA
20PSPA7_29032988077..2989162 [+], 1086152989385putative transcriptional regulator  Sfa3
21PSPA7_29042989398..2989664 [+], 267152987985hypothetical protein 
22PSPA7_2905 (msuE)2989824..2990384 [+], 561152985039NADH-dependent FMN reductase MsuE 
23PSPA7_2906 (msuD)2990394..2991539 [+], 1146152987178methanesulfonate sulfonatase MsuD 
24PSPA7_29072991568..2992752 [+], 1185152986198putative FMNH2-dependent monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation