SecReT6
I. Summary
SecReT6 ID220 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location361901..399776
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpsIP31758_0307357135..357350 [-], 216153949675hypothetical protein 
2YpsIP31758_0308 (malK2)357396..358505 [+], 1110153949249maltose/maltodextrin transporter ATP-binding protein 
3YpsIP31758_0309 (lamB)358576..359847 [+], 1272153949490maltoporin 
4YpsIP31758_0310 (malM)360088..360999 [+], 912153947065maltose regulon periplasmic protein 
5YpsIP31758_0311361733..361849 [-], 117153950439hypothetical protein 
6YpsIP31758_0312361901..362419 [-], 519153948422hypothetical protein  TssD
7YpsIP31758_0313362943..363440 [+], 498153947969hypothetical protein  TssB
8YpsIP31758_0314363508..364989 [+], 1482153949851hypothetical protein  TssC
9YpsIP31758_0315364996..365436 [+], 441153949284hypothetical protein  TssE
10YpsIP31758_0316365436..367256 [+], 1821153947194hypothetical protein  TssF
11YpsIP31758_0317367277..368308 [+], 1032153950860hypothetical protein  TssG
12YpsIP31758_0318368434..369750 [+], 1317153947604FHA domain-containing protein  Fha
13YpsIP31758_0319369750..370295 [+], 546153948365lipoprotein  TssJ
14YpsIP31758_0320370298..371644 [+], 1347153947118hypothetical protein  TssK
15YpsIP31758_0321371644..372411 [+], 768153947590hypothetical protein  TssL
16YpsIP31758_0322 (clpV2)372422..375025 [+], 2604153950295type VI secretion ATPase  TssH
17YpsIP31758_0323375022..375819 [+], 798153950691Fis family transcriptional regulator 
18YpsIP31758_0324375816..376502 [+], 687153948416hypothetical protein 
19YpsIP31758_0325376508..377896 [+], 1389153949756ImpA domain-containing protein  TssA
20YpsIP31758_0326377928..381461 [+], 3534153947566lipoprotein  TssM
21YpsIP31758_0327381613..382926 [+], 1314153947888ImpA domain-containing protein  TssA
22YpsIP31758_0328382948..385170 [+], 2223153950765Rhs element Vgr protein  TssI
23YpsIP31758_0329385176..385634 [+], 459153947100hypothetical protein 
24YpsIP31758_0330385627..389835 [+], 4209153949971RHS/YD repeat-containing protein  PAAR
25YpsIP31758_0331389845..390717 [+], 873153950274hypothetical protein 
26YpsIP31758_0332391172..391342 [+], 171153948437hypothetical protein 
27YpsIP31758_0333391335..395591 [+], 4257153949101RHS/YD repeat-containing protein  PAAR
28YpsIP31758_0334395591..396100 [+], 510153947655hypothetical protein 
29YpsIP31758_0335396154..396507 [-], 354153948253hypothetical protein 
30YpsIP31758_0336396504..396728 [-], 225153950391hypothetical protein 
31YpsIP31758_0337396810..397217 [-], 408153950714DNA-binding protein 
32YpsIP31758_0338397380..397556 [+], 177153949417hypothetical protein 
33YpsIP31758_0339397578..399776 [+], 2199153949195VgrG protein  TssI
34YpsIP31758_0340399779..400201 [+], 423153950721hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpsIP31758_0312361901..362419 [-], 519153948422hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A