SecReT6
I. Summary
SecReT6 ID222 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location932854..967215
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011221111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpsIP31758_0772928475..929359 [+], 885153946885RepB plasmid partitioning protein 
2YpsIP31758_0773929753..929992 [-], 240153947062hypothetical protein 
3YpsIP31758_0774930649..930918 [-], 270153947520hypothetical protein 
4YpsIP31758_0776931614..931871 [-], 258153948405PerC family transcriptional regulator 
5YpsIP31758_0777932854..933354 [+], 501153947945hypothetical protein  TssB
6YpsIP31758_0778933399..934952 [+], 1554153949766hypothetical protein  TssC
7YpsIP31758_0779935078..936430 [+], 1353153949312hypothetical protein  TssK
8YpsIP31758_0780936427..937113 [+], 687153946938hypothetical protein  TssL
9YpsIP31758_0781937113..938834 [+], 1722153950607OmpA domain-containing protein  TagL
10YpsIP31758_0782938848..939339 [+], 492153950535hypothetical protein  TssD
11YpsIP31758_0783939402..939530 [-], 129153947741hypothetical protein 
12YpsIP31758_0785942531..945029 [+], 2499153947539Rhs element Vgr protein  TssI
13YpsIP31758_0786945147..946418 [+], 1272153950629hypothetical protein 
14YpsIP31758_0787946425..946817 [+], 393153950779lipoprotein 
15YpsIP31758_0788947132..949834 [+], 2703153950285Rhs element Vgr protein  TssI
16YpsIP31758_0789949837..950253 [+], 417153949848hypothetical protein 
17YpsIP31758_0790950262..951074 [+], 813153949290hypothetical protein 
18YpsIP31758_0791951254..952009 [+], 756153947574hypothetical protein 
19YpsIP31758_0792952014..952532 [+], 519153947328hypothetical protein 
20YpsIP31758_0793953009..953152 [+], 144153947085hypothetical protein 
21YpsIP31758_0794953312..954544 [+], 1233153948425hypothetical protein 
22YpsIP31758_0795954541..957963 [+], 3423153949709hypothetical protein  TssM
23YpsIP31758_0796958005..959609 [+], 1605153949179ImpA domain-containing protein  TssA
24YpsIP31758_0797959627..960685 [+], 1059153948159PAAR domain-containing protein  PAAR
25YpsIP31758_0798960700..961155 [+], 456153948096hypothetical protein 
26YpsIP31758_0799961183..961299 [+], 117153949253hypothetical protein 
27YpsIP31758_0800961400..963163 [+], 1764153950751hypothetical protein  TssF
28YpsIP31758_0801963127..964212 [+], 1086153950870hypothetical protein  TssG
29YpsIP31758_0802964187..964768 [+], 582153950286hypothetical protein  TssJ
30YpsIP31758_0803964768..965217 [+], 450153950743hypothetical protein  TssE
31YpsIP31758_0804965335..965463 [-], 129153946855hypothetical protein 
32YpsIP31758_0805965818..967215 [+], 1398153950380ImpA domain-containing protein  TssA
33YpsIP31758_0806967310..967942 [+], 633153948017hypothetical protein 
34YpsIP31758_0807968006..969856 [+], 1851153948461hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpsIP31758_0782938848..939339 [+], 492153950535hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A