SecReT6
I. Summary
SecReT6 ID223 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location1585414..1618917
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpsIP31758_1351 (mltB)1581625..1582719 [+], 1095153950213murein hydrolase B 
2YpsIP31758_13521582941..1583054 [+], 114153949793hypothetical protein 
3YpsIP31758_13531583960..1584562 [+], 603153949343LuxR family transcriptional regulator 
4YpsIP31758_13541584935..1585417 [-], 483153948804hypothetical protein 
5YpsIP31758_13551585414..1587096 [-], 1683153947393OmpA domain-containing protein  TagL
6YpsIP31758_13561587097..1587798 [-], 702153947280hypothetical protein 
7YpsIP31758_13571587795..1589132 [-], 1338153950827hypothetical protein 
8YpsIP31758_13581589172..1590203 [-], 1032153950038hypothetical protein 
9YpsIP31758_13591590210..1591403 [-], 1194153949732ImpA domain-containing protein  TssA
10YpsIP31758_13601591502..1592527 [-], 1026153948603hypothetical protein  TssG
11YpsIP31758_13611592527..1594407 [-], 1881153947692hypothetical protein  TssF
12YpsIP31758_13621595191..1597848 [+], 2658153947465Clp protease-associated protein ClpB  TssH
13YpsIP31758_13631598059..1598604 [+], 546153949911frimbrial protein 
14YpsIP31758_13641598761..1599522 [+], 762153949430pili assembly chaperone 
15YpsIP31758_13651599821..1602322 [+], 2502153949244fimbrial usher protein 
16YpsIP31758_13661602307..1602915 [+], 609153948656fimbrial protein 
17YpsIP31758_13671603021..1603545 [+], 525153947652hypothetical protein  TssB
18YpsIP31758_13681603569..1605071 [+], 1503153947159hypothetical protein  TssC
19YpsIP31758_13691605404..1605889 [+], 486153947260hypothetical protein  TssD
20YpsIP31758_13701606163..1606702 [+], 540153947727lipoprotein  TssJ
21YpsIP31758_13711606706..1608055 [+], 1350153949757hypothetical protein  TssK
22YpsIP31758_13721608052..1609428 [+], 1377153949967OmpA domain-containing protein  TssL
23YpsIP31758_13731609437..1613264 [+], 3828153948377hypothetical protein  TssM
24YpsIP31758_13741613591..1616341 [+], 2751153949042Rhs element Vgr protein  TssI
25YpsIP31758_13751616440..1616700 [+], 261153946845hypothetical protein  PAAR
26YpsIP31758_13761616706..1617548 [+], 843153947418hypothetical protein 
27YpsIP31758_13771617568..1618374 [+], 807153950268ImpE family protein  TagJ
28YpsIP31758_13781618438..1618917 [+], 480153950868hypothetical protein  TssE
29YpsIP31758_13791618942..1619289 [+], 348153946829hypothetical protein 
30YpsIP31758_1380 (phnA)1619364..1619705 [-], 342153947442alkylphosphonate utilization operon protein PhnA 
31YpsIP31758_13811620081..1622066 [-], 1986153949792hypothetical protein 
32YpsIP31758_13821622125..1622667 [-], 543153950392LemA family protein 
33YpsIP31758_13831623343..1623522 [-], 180153948208hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpsIP31758_13691605404..1605889 [+], 486153947260hypothetical protein ROD_27741

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Proteins        Genes
N/A
N/A