SecReT6
I. Summary
SecReT6 ID224 insolico
StrainYersinia pseudotuberculosis IP 31758
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009708
Location2808154..2844912
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpsIP31758_2481 (moeB)2803334..2804104 [+], 771153950195molybdopterin biosynthesis protein MoeB 
2YpsIP31758_24822804176..2804823 [-], 648153949587hypothetical protein 
3YpsIP31758_24832805041..2806636 [-], 1596153949013ABC transporter ATP-binding protein 
4YpsIP31758_24842807319..2807942 [+], 624153948650hypothetical protein 
5YpsIP31758_24852808154..2809521 [-], 1368153948566ImpA domain-containing protein  TssA
6YpsIP31758_24862809545..2809997 [-], 453153947844hypothetical protein  TssE
7YpsIP31758_24872809997..2810578 [-], 582153947257hypothetical protein  TssJ
8YpsIP31758_24882810553..2811638 [-], 1086153950062hypothetical protein  TssG
9YpsIP31758_24892811602..2813365 [-], 1764153950468hypothetical protein  TssF
10YpsIP31758_24902813457..2813915 [-], 459153950705hypothetical protein 
11YpsIP31758_24912813918..2815033 [-], 1116153949427hypothetical protein  PAAR
12YpsIP31758_24922815051..2816652 [-], 1602153947187ImpA domain-containing protein  TssA
13YpsIP31758_24932816697..2817518 [-], 822153950131hypothetical protein 
14YpsIP31758_24942817531..2820572 [-], 3042153950521hypothetical protein 
15YpsIP31758_24952820654..2824076 [-], 3423153948949hypothetical protein  TssM
16YpsIP31758_24962824073..2825305 [-], 1233153949859hypothetical protein 
17YpsIP31758_24982827251..2827418 [-], 168153947988hypothetical protein 
18YpsIP31758_24992828017..2828238 [+], 222153948602hypothetical protein 
19YpsIP31758_25002828245..2829738 [-], 1494153947112M23 peptidase domain-containing protein 
20YpsIP31758_25012829754..2830014 [-], 261153947687hypothetical protein 
21YpsIP31758_25022830168..2830941 [-], 774153950057hypothetical protein 
22YpsIP31758_25032830938..2833238 [-], 2301153947205M23 peptidase domain-containing protein 
23YpsIP31758_25042833254..2835602 [-], 2349153948683Rhs element Vgr protein  TssI
24YpsIP31758_25052835605..2838247 [-], 2643153948469AAA ATPase  TssH
25YpsIP31758_25062838541..2839032 [-], 492153947895hypothetical protein  TssD
26YpsIP31758_25072839036..2840772 [-], 1737153949846OmpA domain-containing protein  TagL
27YpsIP31758_25082840772..2841458 [-], 687153949263hypothetical protein  TssL
28YpsIP31758_25092841455..2842807 [-], 1353153949289hypothetical protein  TssK
29YpsIP31758_25102842819..2844369 [-], 1551153950793hypothetical protein  TssC
30YpsIP31758_25112844412..2844912 [-], 501153950174hypothetical protein  TssB
31YpsIP31758_25122845901..2846749 [-], 849153950287acyltransferase 
32YpsIP31758_25132846848..2847096 [-], 249153950570acyl carrier protein 
33YpsIP31758_25142847134..2847574 [-], 441153949209hypothetical protein 
34YpsIP31758_25152847661..2848449 [-], 789153948064hypothetical protein 
35YpsIP31758_25162848452..2849204 [-], 753153948254polyketide biosynthesis enoyl-CoA hydratase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpsIP31758_25062838541..2839032 [-], 492153947895hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A