SecReT6
I. Summary
SecReT6 ID226 insolico
StrainCronobacter sakazakii ATCC BAA-894
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009778
Location1970175..1978958
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001101102
ComponentTssGTssJTssKTssM
Number2202
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ESA_020331965924..1966403 [-], 480156934204hypothetical protein 
2ESA_020341967100..1968098 [-], 999156934205hypothetical protein 
3ESA_020351968103..1969002 [-], 900156934206hypothetical protein 
4ESA_020361969450..1969905 [-], 456156934207hypothetical protein 
5ESA_020371970175..1972733 [-], 2559156934208hypothetical protein  TssI
6ESA_020381972737..1973258 [-], 522156934209hypothetical protein  TssJ
7ESA_020391973284..1974366 [-], 1083156934210hypothetical protein  TssG
8ESA_020401974330..1976099 [-], 1770156934211hypothetical protein  TssF
9ESA_020411976281..1977651 [-], 1371156934212hypothetical protein  TssM
10ESA_020421977629..1978411 [-], 783156934213hypothetical protein  TssC
11ESA_020431978446..1978958 [-], 513156934214hypothetical protein  TssB
12ESA_020441979485..1979826 [-], 342156934215hypothetical protein 
13ESA_020451979867..1980427 [+], 561156934216hypothetical protein 
14ESA_020461980521..1982551 [-], 2031156934217choline transport protein BetT 
15ESA_020471982803..1983411 [+], 609156934218transcriptional regulator BetI 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Joseph S et al. (2012). Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PudMed:23166675] in_silico
(2) Franco AA et al. (2011). Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp. Appl Environ Microbiol. 77(10):3255-67. [PudMed:21421789] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation