SecReT6
I. Summary
SecReT6 ID227 insolico
StrainCronobacter sakazakii ATCC BAA-894
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009778
Location3852781..3897553
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ESA_039033847803..3852350 [-], 4548156936009hypothetical protein  PAAR
2ESA_039043852353..3852784 [-], 432156936010hypothetical protein 
3ESA_039053852781..3854721 [-], 1941156936011hypothetical protein  TssI
4ESA_039073854770..3854901 [-], 132156936013hypothetical protein 
5ESA_039063854890..3855024 [+], 135156936012hypothetical protein 
6ESA_039083854983..3855147 [-], 165156936014hypothetical protein 
7ESA_039093855415..3855954 [-], 540156936015hypothetical protein 
8ESA_039103856034..3856468 [-], 435156936016hypothetical protein 
9ESA_039113856761..3857075 [-], 315156936017hypothetical protein 
10ESA_039123857271..3857813 [-], 543156936018hypothetical protein 
11ESA_039133857813..3861832 [-], 4020156936019hypothetical protein 
12ESA_039143862051..3862731 [-], 681156936020hypothetical protein 
13ESA_039153862829..3864124 [-], 1296156936021hypothetical protein 
14ESA_039163864117..3865271 [-], 1155156936022hypothetical protein 
15ESA_039173865273..3867420 [-], 2148156936023hypothetical protein  TssI
16ESA_039183867552..3868313 [-], 762156936024hypothetical protein 
17ESA_039193868310..3869740 [-], 1431156936025hypothetical protein 
18ESA_039203869865..3871298 [-], 1434156936026hypothetical protein 
19ESA_039213871329..3873944 [-], 2616156936027hypothetical protein  TssH
20ESA_039223874161..3875204 [-], 1044156936028hypothetical protein  TssG
21ESA_039233875201..3877072 [-], 1872156936029hypothetical protein  TssF
22ESA_039243877075..3877647 [-], 573156936030hypothetical protein  TssE
23ESA_039253877640..3878473 [-], 834156936031hypothetical protein  TagJ
24ESA_039263878499..3879503 [-], 1005156936032hypothetical protein 
25ESA_039273879522..3880316 [-], 795156936033hypothetical protein 
26ESA_039283880313..3882244 [-], 1932156936034hypothetical protein  Fha
27ESA_039293882344..3882757 [-], 414156936035hypothetical protein 
28ESA_039303882754..3883626 [-], 873156936036hypothetical protein 
29ESA_039323883806..3884177 [-], 372156936038hypothetical protein 
30ESA_039313883894..3884232 [+], 339156936037hypothetical protein 
31ESA_039333884198..3884566 [-], 369156936039hypothetical protein 
32ESA_039343884614..3885096 [-], 483156936040hypothetical protein  TssD
33ESA_039353885353..3885847 [-], 495156936041hypothetical protein 
34ESA_039363885844..3886278 [-], 435156936042hypothetical protein 
35ESA_039383886302..3886394 [-], 93156936044hypothetical protein 
36ESA_039373886324..3886482 [+], 159156936043hypothetical protein 
37ESA_039393886456..3886875 [-], 420156936045hypothetical protein 
38ESA_039413886942..3888441 [-], 1500156936047hypothetical protein  TssC
39ESA_039403887380..3889032 [+], 1653156936046hypothetical protein 
40ESA_039423888445..3888981 [-], 537156936048hypothetical protein  TssB
41ESA_039433889045..3890067 [-], 1023156936049hypothetical protein  TssA
42ESA_039443890077..3890787 [-], 711156936050hypothetical protein 
43ESA_039453890804..3894424 [-], 3621156936051hypothetical protein  TssM
44ESA_039463894426..3895661 [-], 1236156936052hypothetical protein  TssL
45ESA_039473895679..3897022 [-], 1344156936053hypothetical protein  TssK
46ESA_039483897047..3897553 [-], 507156936054hypothetical protein  TssJ
47ESA_039493897578..3898072 [-], 495156936055hypothetical protein 
48ESA_039503899468..3899920 [+], 453156936056hypothetical protein 
49ESA_03951 (emrD)3900123..3901310 [+], 1188156936057multidrug resistance protein D 
50ESA_039523901213..3902310 [-], 1098156936058hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ESA_039343884614..3885096 [-], 483156936040hypothetical protein SMA2263

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Proteins        Genes
N/A
(1) Joseph S et al. (2012). Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 7(11):e49455. [PudMed:23166675] in_silico
(2) Franco AA et al. (2011). Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp. Appl Environ Microbiol. 77(10):3255-67. [PudMed:21421789] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation