SecReT6
I. Summary
SecReT6 ID229 insolico
StrainVibrio harveyi ATCC BAA-1116
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009784
Location1035676..1065048
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VIBHAR_058471031179..1033335 [-], 2157156977062hypothetical protein 
2VIBHAR_058481033586..1034080 [-], 495156977063hypothetical protein 
3VIBHAR_058491034164..1034601 [+], 438156977064hypothetical protein 
4VIBHAR_058501034652..1035572 [+], 921156977065hypothetical protein 
5VIBHAR_058511035676..1036467 [-], 792156977066hypothetical protein  TssL
6VIBHAR_058521036464..1037789 [-], 1326156977067hypothetical protein  TssK
7VIBHAR_058531037801..1038250 [-], 450156977068hypothetical protein  TssJ
8VIBHAR_058541038294..1039808 [-], 1515156977069hypothetical protein  Fha
9VIBHAR_058551039818..1040453 [-], 636156977070hypothetical protein 
10VIBHAR_058561041040..1042344 [+], 1305156977071hypothetical protein  TssA
11VIBHAR_058571042372..1045761 [+], 3390156977072hypothetical protein  TssM
12VIBHAR_058581045794..1046246 [+], 453156977073transcriptional regulator 
13VIBHAR_058591046346..1047344 [-], 999156977074hypothetical protein  TssG
14VIBHAR_058601047341..1049089 [-], 1749156977075hypothetical protein  TssF
15VIBHAR_058611049100..1049510 [-], 411156977076hypothetical protein  TssE
16VIBHAR_058621049572..1051047 [-], 1476156977077hypothetical protein  TssC
17VIBHAR_058631051056..1051562 [-], 507156977078hypothetical protein  TssB
18VIBHAR_058641051589..1053190 [-], 1602156977079hypothetical protein  TssA
19VIBHAR_058651053190..1055250 [-], 2061156977080serine-threonine protein kinase 
20VIBHAR_058661055429..1056373 [-], 945156977081hypothetical protein 
21VIBHAR_058671056366..1057358 [-], 993156977082hypothetical protein 
22VIBHAR_058681057339..1058658 [-], 1320156977083hypothetical protein 
23VIBHAR_058691058760..1059245 [-], 486156977084hypothetical protein 
24VIBHAR_058701059245..1061323 [-], 2079156977085hypothetical protein  TssI
25VIBHAR_058711061396..1061896 [-], 501156977086hypothetical protein  TssD
26VIBHAR_058721062364..1065048 [+], 2685156977087ClpA/B type protease  TssH
27VIBHAR_058731065035..1066663 [+], 1629156977088nitric oxide reductase regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1263 , VEPGS_0021, VP1388

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VIBHAR_00543522122..524701 [-], 2580156972866hypothetical protein VPA1263
2VIBHAR_058711061396..1061896 [-], 501156977086hypothetical protein VEPGS_0021
3VIBHAR_058771072915..1074612 [-], 1698156977092hypothetical protein VP1388

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Proteins        Genes

Homology Immunity protein list
v12G01_02260

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VIBHAR_067901912367..1913020 [-], 654156977994hypothetical protein v12G01_02260

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Proteins        Genes
N/A