SecReT6
I. Summary
SecReT6 ID231 insolico
StrainEscherichia coli E24377A
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009801
Location243795..265361
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EcE24377A_0223239237..239335 [+], 99157157811hypothetical protein 
2EcE24377A_0224239557..240342 [+], 786157158497lipoprotein 
3EcE24377A_0225240968..241882 [-], 915157159163hypothetical protein 
4EcE24377A_0226241926..242408 [-], 483157155635hypothetical protein  TssD
5EcE24377A_0227242432..243784 [-], 1353157155016ImpA domain-containing protein  TssA
6EcE24377A_0228243795..247319 [-], 3525157155738hypothetical protein  TssM
7EcE24377A_0229247338..248750 [-], 1413157156439ImpA domain-containing protein  TssA
8EcE24377A_0230248755..249498 [-], 744157157081type VI secretion-associated protein 
9EcE24377A_0231249495..252254 [-], 2760157157697ATP-dependent chaperone protein ClpB  TssH
10EcE24377A_0232252263..253024 [-], 762157158272hypothetical protein  TssL
11EcE24377A_0233253029..254360 [-], 1332157159130hypothetical protein  TssK
12EcE24377A_0234254363..254887 [-], 525157158389type VI secretion lipoprotein  TssJ
13EcE24377A_0235254884..256164 [-], 1281157159137hypothetical protein  Fha
14EcE24377A_0236256189..257271 [-], 1083157158454hypothetical protein  TssG
15EcE24377A_0237257235..259085 [-], 1851157155723hypothetical protein  TssF
16EcE24377A_0238259089..259502 [-], 414157155067hypothetical protein  TssE
17EcE24377A_0239259509..260984 [-], 1476157157099hypothetical protein  TssC
18EcE24377A_0240261035..261259 [-], 225157156295hypothetical protein  TssC
19EcE24377A_0241261294..261794 [-], 501157158244hypothetical protein  TssB
20EcE24377A_0242262222..262365 [+], 144157157420hypothetical protein 
21EcE24377A_0243262492..263010 [+], 519157157744hypothetical protein  TssD
22EcE24377A_0244263043..263180 [+], 138157157261hypothetical protein 
23EcE24377A_0245263220..265361 [+], 2142157159093ImpA family type VI secretion-associated protein  TssI
24EcE24377A_0246265437..269684 [+], 4248157158534Rhs protein  PAAR
25EcE24377A_0247269668..270150 [+], 483157155100hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EcE24377A_0243262492..263010 [+], 519157157744hypothetical protein ECA4275

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Proteins        Genes
N/A
N/A