SecReT6
I. Summary
SecReT6 ID233 insolico
StrainSerratia proteamaculans 568
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009832
Location1958949..1988005
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Spro_17791954180..1954581 [-], 402157370022hypothetical protein 
2Spro_17801954913..1956346 [+], 1434157370023hypothetical protein 
3Spro_17811956779..1957375 [+], 597157370024hypothetical protein 
4Spro_17831958949..1959446 [+], 498157370025hypothetical protein  TssB
5Spro_17841959481..1961028 [+], 1548157370026hypothetical protein  TssC
6Spro_17851961045..1962385 [+], 1341157370027hypothetical protein  TssK
7Spro_17861962382..1963071 [+], 690157370028hypothetical protein  TssL
8Spro_17871963068..1964777 [+], 1710157370029OmpA/MotB domain-containing protein  TagL
9Spro_17881964781..1965272 [+], 492157370030hypothetical protein  TssD
10Spro_17891965445..1968099 [+], 2655157370031ATPase  TssH
11Spro_17901968619..1970997 [+], 2379157370032Rhs element Vgr protein  TssI
12Spro_17911971004..1971783 [+], 780157370033hypothetical protein 
13Spro_17921971895..1972428 [+], 534157370034hypothetical protein 
14Spro_17931972537..1973070 [+], 534157370035hypothetical protein 
15Spro_17941973179..1973691 [+], 513157370036hypothetical protein 
16Spro_17951973679..1976126 [+], 2448157370037hypothetical protein 
17Spro_17961976145..1976402 [+], 258157370038PAAR repeat-containing protein  PAAR
18Spro_17971976576..1977538 [+], 963157370039hypothetical protein 
19Spro_17981977765..1980968 [+], 3204157370040ImcF domain-containing protein  TssM
20Spro_17991980968..1982560 [+], 1593157370041ImpA domain-containing protein  TssA
21Spro_18001982588..1984342 [+], 1755157370042hypothetical protein  TssF
22Spro_18011984306..1985391 [+], 1086157370043hypothetical protein  TssG
23Spro_18021985369..1985914 [+], 546157370044hypothetical protein  TssJ
24Spro_18031985914..1986363 [+], 450157370045GPW/gp25 family protein  TssE
25Spro_18041986614..1988005 [+], 1392157370046ImpA domain-containing protein  TssA
26Spro_18051988172..1990166 [-], 1995157370047choline/carnitine/betaine transporter 
27Spro_18061990629..1990844 [+], 216157370048hypothetical protein 
28Spro_18071990952..1992361 [-], 1410157370049gluconate 2-dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Spro_17881964781..1965272 [+], 492157370030hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A