SecReT6
I. Summary
SecReT6 ID234 insolico
StrainSerratia proteamaculans 568
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009832
Location3294549..3324584
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Spro_29913289587..3290006 [+], 420157371231universal stress protein UspC 
2Spro_29923290083..3291117 [+], 1035157371232alcohol dehydrogenase 
3Spro_29933291233..3291880 [-], 648157371233pyrrolidone-carboxylate peptidase 
4Spro_29943291978..3292910 [+], 933157371234LysR family transcriptional regulator 
5Spro_29953293668..3293955 [+], 288157371235hypothetical protein 
6Spro_29963294022..3294522 [+], 501157371236hypothetical protein 
7Spro_29973294549..3295079 [+], 531157371237putative lipoprotein  TssJ
8Spro_29983295120..3296466 [+], 1347157371238hypothetical protein  TssK
9Spro_29993296470..3297690 [+], 1221157371239hypothetical protein  TssL
10Spro_30003297690..3301328 [+], 3639157371240ImcF domain-containing protein  TssM
11Spro_30013301343..3302065 [+], 723157371241hypothetical protein 
12Spro_30023302089..3303114 [+], 1026157371242ImpA domain-containing protein  TssA
13Spro_30033303219..3303755 [+], 537157371243hypothetical protein  TssB
14Spro_30043303759..3305264 [+], 1506157371244hypothetical protein  TssC
15Spro_30053305545..3306027 [+], 483157371245hypothetical protein  TssD
16Spro_30063306251..3307969 [+], 1719157371246FHA domain-containing protein  Fha
17Spro_30073307969..3308742 [+], 774157371247protein serine/threonine phosphatase 
18Spro_30083308773..3309759 [+], 987157371248hypothetical protein 
19Spro_30093309777..3310592 [+], 816157371249virulence protein SciE type  TagJ
20Spro_30103310595..3311170 [+], 576157371250GPW/gp25 family protein  TssE
21Spro_30113311175..3313061 [+], 1887157371251hypothetical protein  TssF
22Spro_30123313058..3314131 [+], 1074157371252hypothetical protein  TssG
23Spro_30133314184..3316847 [+], 2664157371253ATPase  TssH
24Spro_30143316896..3318338 [+], 1443157371254serine/threonine protein kinase 
25Spro_30153318424..3320361 [+], 1938157371255Rhs element Vgr protein  TssI
26Spro_30163320375..3321181 [+], 807157371256hypothetical protein 
27Spro_30173321185..3322519 [+], 1335157371257PAAR repeat-containing protein  PAAR
28Spro_30183322516..3323616 [+], 1101157371258ADP-ribosyl-(dinitrogen reductase) hydrolase 
29Spro_30193324102..3324584 [+], 483157371259hypothetical protein  TssD
30Spro_30203324599..3325507 [+], 909157371260hypothetical protein 
31Spro_30213325601..3326071 [-], 471157371261DNA gyrase inhibitor 
32Spro_30223326104..3326946 [-], 843157371262tryptophan 23-dioxygenase 
33Spro_30233327144..3327659 [-], 516157371263dehydratase 
34Spro_30243327653..3328609 [-], 957157371264ornithine cyclodeaminase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA2276, SMA3455, SMA3980

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Spro_30053305545..3306027 [+], 483157371245hypothetical protein SMA2263
2Spro_30153318424..3320361 [+], 1938157371255Rhs element Vgr protein SMA2276
3Spro_30193324102..3324584 [+], 483157371259hypothetical protein SMA3455
4Spro_47555259473..5260468 [-], 996157372987hypothetical protein SMA3980

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Proteins        Genes

Homology Immunity protein list
SMA3979

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Spro_47545258895..5259473 [-], 579157372986hypothetical protein SMA3979

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Proteins        Genes
N/A