SecReT6
I. Summary
SecReT6 ID235 insolico
StrainAzorhizobium caulinodans ORS 571
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009937
Location2912176..2940198
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZC_25812907429..2908520 [-], 1092158424205nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 
2AZC_25822908700..2910190 [+], 1491158424206serine/threonine protein kinase 
3AZC_25832910195..2910926 [+], 732158424207serine/threonine protein phosphatase 
4AZC_25842910923..2911384 [+], 462158424208hypothetical protein 
5AZC_2585 (parA)2911381..2912163 [+], 783158424209ParA family protein 
6AZC_25862912176..2912775 [-], 600158424210hypothetical protein  TssJ
7AZC_25872912996..2915635 [+], 2640158424211ATPase  TssH
8AZC_25882915632..2917095 [+], 1464158424212hypothetical protein 
9AZC_25892917166..2917645 [+], 480158424213hypothetical protein  TssD
10AZC_25902917675..2919684 [+], 2010158424214hypothetical protein 
11AZC_25912919813..2920289 [+], 477158424215hypothetical protein  TssD
12AZC_25922920501..2922543 [+], 2043158424216hypothetical protein  TssI
13AZC_25932922554..2923156 [+], 603158424217hypothetical protein 
14AZC_25942923153..2924328 [+], 1176158424218forkhead domain-containing protein  Fha
15AZC_25952924325..2925659 [+], 1335158424219hypothetical protein  TssK
16AZC_2596 (ompA)2925898..2927382 [+], 1485158424220OmpA family protein  TssL
17AZC_2597 (imcF)2927404..2930946 [+], 3543158424221ImcF-related protein  TssM
18AZC_2598 (impA)2931067..2932233 [+], 1167158424222ImpA-related N-terminal protein  TssA
19AZC_25992932298..2932810 [+], 513158424223hypothetical protein  TssB
20AZC_26002932815..2934299 [+], 1485158424224hypothetical protein  TssC
21AZC_26012934467..2936047 [+], 1581158424225hypothetical protein  TssC
22AZC_26022936068..2936868 [+], 801158424226hypothetical protein  TagJ
23AZC_26032936865..2937317 [+], 453158424227hypothetical protein  TssE
24AZC_26042937314..2939137 [+], 1824158424228hypothetical protein  TssF
25AZC_26052939134..2940198 [+], 1065158424229hypothetical protein  TssG
26AZC_2606 (ubiE)2940239..2941792 [+], 1554158424230methylase 
27AZC_2607 (thiC)2942174..2944030 [+], 1857158424231thiamine biosynthesis protein 
28AZC_26082944361..2944759 [-], 399158424232hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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