SecReT6
I. Summary
SecReT6 ID236 insolico
StrainDelftia acidovorans SPH-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010002
Location4228393..4266184
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Daci_38334223498..4223905 [+], 408160899267hypothetical protein 
2Daci_38344223952..4225739 [-], 1788160899268methyl-accepting chemotaxis sensory transducer 
3Daci_38354225781..4226617 [-], 837160899269hypothetical protein 
4Daci_38364226841..4227779 [-], 939160899270GntR family transcriptional regulator 
5Daci_38374228393..4228875 [-], 483160899271hypothetical protein  TssD
6Daci_38384229490..4231553 [+], 2064160899272serine/threonine protein kinase 
7Daci_38394231563..4232351 [+], 789160899273hypothetical protein 
8Daci_38404232354..4232848 [+], 495160899274hypothetical protein 
9Daci_38414232891..4234936 [+], 2046160899275FHA domain-containing protein  Fha
10Daci_38424234933..4235721 [+], 789160899276protein serine/threonine phosphatase 
11Daci_38434235741..4236340 [+], 600160899277putative lipoprotein  TssJ
12Daci_38444236358..4237692 [+], 1335160899278type VI secretion protein  TssK
13Daci_38454237714..4239045 [+], 1332160899279hypothetical protein  TssL
14Daci_38464239050..4242706 [+], 3657160899280type VI secretion protein IcmF  TssM
15Daci_38474242688..4243392 [+], 705160899281hypothetical protein 
16Daci_38484243450..4244487 [+], 1038160899282ImpA family type VI secretion-associated protein  TssA
17Daci_38494244484..4244906 [+], 423160899283hypothetical protein 
18Daci_38504245030..4245572 [+], 543160899284type VI secretion protein  TssB
19Daci_38514245601..4247094 [+], 1494160899285EvpB family type VI secretion protein  TssC
20Daci_38524247099..4247596 [+], 498160899286hypothetical protein 
21Daci_38534247670..4248578 [+], 909160899287hypothetical protein 
22Daci_38544248655..4249026 [+], 372160899288putative cytoplasmic protein 
23Daci_38554249035..4249595 [+], 561160899289hypothetical protein 
24Daci_38564249644..4250453 [+], 810160899290virulence protein SciE type  TagJ
25Daci_38574250465..4250911 [+], 447160899291hypothetical protein 
26Daci_38584250923..4251477 [+], 555160899292type VI secretion system lysozyme-like protein  TssE
27Daci_38594251501..4253375 [+], 1875160899293type VI secretion protein  TssF
28Daci_38604253462..4254562 [+], 1101160899294type VI secretion protein  TssG
29Daci_38614254603..4255436 [+], 834160899295hypothetical protein 
30Daci_38624255472..4256077 [+], 606160899296hypothetical protein 
31Daci_38634256082..4256645 [+], 564160899297hypothetical protein 
32Daci_38644256651..4259437 [+], 2787160899298type VI secretion ATPase  TssH
33Daci_38654259434..4261725 [+], 2292160899299peptidase S41 
34Daci_38664261762..4262721 [+], 960160899300hypothetical protein 
35Daci_38674262724..4263881 [+], 1158160899301hypothetical protein 
36Daci_38684263992..4266184 [+], 2193160899302ImpA family type VI secretion-associated protein  TssI
37Daci_38694266195..4267511 [+], 1317160899303hypothetical protein 
38Daci_38704267504..4267863 [+], 360160899304hypothetical protein  PAAR
39Daci_38714267870..4268868 [+], 999160899305hypothetical protein 
40Daci_38724268875..4269345 [+], 471160899306hypothetical protein 
41Daci_38734269359..4270423 [+], 1065160899307hypothetical protein 
42Daci_38744270598..4271143 [+], 546160899308YD repeat-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Daci_38374228393..4228875 [-], 483160899271hypothetical protein SMA2263

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Proteins        Genes
N/A
N/A