SecReT6
I. Summary
SecReT6 ID237 insolico
StrainSalmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010067
Location2504768..2560524
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1211
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SARI_025732499893..2501056 [-], 1164161504460hypothetical protein 
2SARI_025742501066..2501911 [-], 846161504461hypothetical protein 
3SARI_025752501944..2502885 [-], 942161504462hypothetical protein 
4SARI_025762502896..2503660 [-], 765161504463hypothetical protein 
5SARI_025772504345..2504473 [-], 129161504464hypothetical protein 
6SARI_025782504768..2505355 [-], 588161504465hypothetical protein 
7SARI_025792505599..2505850 [-], 252161504466hypothetical protein 
8SARI_025802505951..2506400 [-], 450161504467hypothetical protein 
9SARI_025812506483..2506794 [-], 312161504468hypothetical protein 
10SARI_025822506835..2507029 [-], 195161504469hypothetical protein 
11SARI_025842507108..2507254 [-], 147161504471hypothetical protein 
12SARI_025832507249..2508079 [+], 831161504470hypothetical protein 
13SARI_025852508186..2508449 [-], 264161504472hypothetical protein 
14SARI_025862508556..2508819 [-], 264161504473hypothetical protein 
15SARI_025872508905..2509060 [-], 156161504474hypothetical protein 
16SARI_025882509270..2509638 [-], 369161504475hypothetical protein 
17SARI_025892509725..2510504 [-], 780161504476hypothetical protein 
18SARI_025902510504..2511394 [-], 891161504477hypothetical protein 
19SARI_025912511324..2511521 [-], 198161504478hypothetical protein 
20SARI_025922511552..2512001 [-], 450161504479hypothetical protein 
21SARI_025932512033..2512410 [-], 378161504480hypothetical protein 
22SARI_025942512777..2513073 [-], 297161504481hypothetical protein 
23SARI_025952513108..2513761 [-], 654161504482hypothetical protein 
24SARI_025962513766..2514233 [-], 468161504483hypothetical protein 
25SARI_025972514257..2514736 [-], 480161504484hypothetical protein 
26SARI_025982514733..2516697 [-], 1965161504485hypothetical protein 
27SARI_025992516748..2519045 [-], 2298161504486hypothetical protein  TssI
28SARI_026002519050..2519373 [-], 324161504487hypothetical protein  TssJ
29SARI_026012519528..2519797 [-], 270161504488hypothetical protein  TssE
30SARI_026022519858..2520184 [-], 327161504489hypothetical protein 
31SARI_026032520159..2523749 [-], 3591161504490hypothetical protein  TssI
32SARI_026042523754..2524278 [-], 525161504491hypothetical protein  TssJ
33SARI_026052524314..2525396 [-], 1083161504492hypothetical protein  TssG
34SARI_026062525360..2527129 [-], 1770161504493hypothetical protein  TssF
35SARI_026072527163..2528782 [-], 1620161504494hypothetical protein  TssA
36SARI_026082528818..2529420 [-], 603161504495hypothetical protein 
37SARI_026092529536..2529709 [+], 174161504496hypothetical protein 
38SARI_026102529750..2530934 [-], 1185161504497hypothetical protein 
39SARI_026112530990..2532003 [-], 1014161504498hypothetical protein 
40SARI_026122532006..2535377 [-], 3372161504499hypothetical protein  TssM
41SARI_026142535370..2536578 [-], 1209161504501hypothetical protein 
42SARI_026132536198..2536308 [+], 111161504500hypothetical protein 
43SARI_026152536988..2537500 [-], 513161504502hypothetical protein 
44SARI_026162537587..2538201 [-], 615161504503hypothetical protein 
45SARI_026172538198..2538485 [-], 288161504504hypothetical protein 
46SARI_026182538491..2538694 [-], 204161504505hypothetical protein 
47SARI_026192538740..2539600 [-], 861161504506hypothetical protein 
48SARI_026202539587..2541803 [-], 2217161504507hypothetical protein 
49SARI_026212541829..2542269 [-], 441161504508hypothetical protein 
50SARI_026222542387..2542779 [+], 393161504509hypothetical protein 
51SARI_026232543015..2543278 [-], 264161504510hypothetical protein  PAAR
52SARI_026242543411..2544289 [-], 879161504511hypothetical protein 
53SARI_026252544273..2547371 [-], 3099161504512hypothetical protein 
54SARI_026262547387..2549744 [-], 2358161504513hypothetical protein  TssI
55SARI_026272549741..2552413 [-], 2673161504514hypothetical protein  TssH
56SARI_026282552577..2553068 [-], 492161504515hypothetical protein  TssD
57SARI_026292553071..2554750 [-], 1680161504516hypothetical protein  TagL
58SARI_026302554750..2555439 [-], 690161504517hypothetical protein  TssL
59SARI_026312555436..2556785 [-], 1350161504518hypothetical protein  TssK
60SARI_026322556798..2558339 [-], 1542161504519hypothetical protein  TssC
61SARI_026332558381..2558878 [-], 498161504520hypothetical protein  TssB
62SARI_026342559425..2559901 [-], 477161504521hypothetical protein 
63SARI_026352560258..2560524 [-], 267161504522hypothetical protein 
64SARI_026362561061..2561264 [+], 204161504523hypothetical protein 
65SARI_026372561261..2562277 [+], 1017161504524hypothetical protein 
66SARI_026382562294..2564444 [-], 2151161504525hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
STY2606 , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SARI_00524523094..523462 [-], 369161502480hypothetical protein STY2606
2SARI_026282552577..2553068 [-], 492161504515hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes

Homology Immunity protein list
STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SARI_00523522576..523094 [-], 519161502479hypothetical protein STY2607

Download FASTA format files
Proteins        Genes
(1) Blondel CJ et al. (2009). Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics. 10:354. [PudMed:19653904] in_silico
 
in_silico This literature contains bioinformatics investigation