SecReT6
I. Summary
SecReT6 ID238 insolico
StrainSalmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010067
Location2617346..2651626
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SARI_027022614228..2614950 [+], 723161504588hypothetical protein 
2SARI_027032615112..2615519 [+], 408161504589hypothetical protein 
3SARI_027042615563..2615763 [-], 201161504590hypothetical protein 
4SARI_027052615945..2616184 [+], 240161504591hypothetical protein 
5SARI_027062616493..2617257 [+], 765161504592adhesin/invasin PagN 
6SARI_027072617493..2617657 [-], 165161504593hypothetical protein 
7SARI_027082617664..2618065 [+], 402161504594hypothetical protein 
8SARI_027092618086..2619468 [-], 1383161504595hypothetical protein  TssA
9SARI_027102619515..2620759 [-], 1245161504596hypothetical protein 
10SARI_027112621574..2621828 [-], 255161504597hypothetical protein 
11SARI_027122621843..2622295 [-], 453161504598hypothetical protein  TssE
12SARI_027132622288..2622830 [-], 543161504599hypothetical protein  TssJ
13SARI_027142622805..2623908 [-], 1104161504600hypothetical protein  TssG
14SARI_027152623863..2625626 [-], 1764161504601hypothetical protein  TssF
15SARI_027162625648..2626178 [-], 531161504602hypothetical protein 
16SARI_027172626241..2626972 [-], 732161504603hypothetical protein 
17SARI_027182627003..2627488 [-], 486161504604hypothetical protein 
18SARI_027192627615..2628598 [-], 984161504605hypothetical protein  TssA
19SARI_027202628598..2632005 [-], 3408161504606hypothetical protein  TssM
20SARI_027212631992..2633149 [-], 1158161504607hypothetical protein 
21SARI_027222633449..2634303 [-], 855161504608hypothetical protein 
22SARI_027232634309..2636534 [-], 2226161504609hypothetical protein 
23SARI_027242636579..2639092 [-], 2514161504610hypothetical protein  TssI
24SARI_027252639170..2639379 [-], 210161504611hypothetical protein 
25SARI_027262639397..2639861 [-], 465161504612hypothetical protein 
26SARI_027272639855..2640424 [-], 570161504613hypothetical protein 
27SARI_027282640439..2643033 [-], 2595161504614hypothetical protein  TssH
28SARI_027292643250..2643756 [-], 507161504615hypothetical protein  TssD
29SARI_027302643746..2645470 [-], 1725161504616hypothetical protein  TagL
30SARI_027312645474..2646124 [-], 651161504617hypothetical protein  TssL
31SARI_027322646121..2647458 [-], 1338161504618hypothetical protein  TssK
32SARI_027332647477..2649024 [-], 1548161504619hypothetical protein  TssC
33SARI_027342649059..2649595 [-], 537161504620hypothetical protein  TssB
34SARI_027352650194..2650556 [-], 363161504621hypothetical protein 
35SARI_027362650632..2651483 [+], 852161504622hypothetical protein 
36SARI_027382651835..2652575 [-], 741161504623DNA polymerase III subunit epsilon 
37SARI_02739 (rnhA)2652630..2653097 [+], 468161504624ribonuclease H 
38SARI_027402653094..2653816 [-], 723161504625hypothetical protein 
39SARI_027412653851..2654606 [+], 756161504626hydroxyacylglutathione hydrolase 
40SARI_02742 (mltD)2654678..2656045 [+], 1368161504627membrane-bound lytic murein transglycosylase D 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SARI_027292643250..2643756 [-], 507161504615hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Blondel CJ et al. (2009). Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes. BMC Genomics. 10:354. [PudMed:19653904] in_silico
 
in_silico This literature contains bioinformatics investigation