SecReT6
I. Summary
SecReT6 ID239 insolico
StrainBurkholderia multivorans ATCC 17616
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_010084
Location3173757..3210426
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bmul_29043170275..3171387 [-], 1113161526073Mg2 transporter protein CorA family protein 
2Bmul_29053171517..3172491 [-], 975161526074hypothetical protein 
3Bmul_29063172613..3173458 [+], 846161526075peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
4Bmul_29073173757..3177704 [+], 3948161526076type VI secretion protein IcmF  TssM
5Bmul_29083177701..3178690 [+], 990161526077hypothetical protein 
6Bmul_29093178695..3179645 [+], 951161526078OmpA/MotB domain-containing protein  TagL
7Bmul_29103179821..3180744 [-], 924161526079hypothetical protein 
8Bmul_29113180818..3181645 [-], 828161526080hypothetical protein 
9Bmul_29123181995..3182903 [-], 909161526081hypothetical protein 
10Bmul_29133182972..3183211 [-], 240161526082hypothetical protein 
11Bmul_29143183473..3184318 [-], 846161526083hypothetical protein 
12Bmul_29153184521..3185336 [-], 816161526084hypothetical protein 
13Bmul_29163185790..3186584 [-], 795161526085hypothetical protein 
14Bmul_29173186903..3187262 [-], 360161526086hypothetical protein 
15Bmul_29183187833..3189539 [-], 1707161526087hypothetical protein 
16Bmul_29193189494..3191788 [-], 2295161526088hypothetical protein 
17Bmul_29203191781..3192632 [-], 852161526089hypothetical protein 
18Bmul_29213192877..3193917 [-], 1041161526090hypothetical protein 
19Bmul_29223193917..3196478 [-], 2562161526091ImpA family type VI secretion-associated protein  TssI
20Bmul_29233196547..3197668 [-], 1122161526092ImpA family type VI secretion-associated protein  TssA
21Bmul_29243197707..3200376 [-], 2670161526093type VI secretion ATPase  TssH
22Bmul_29253200421..3201521 [-], 1101161526094type VI secretion protein  TssG
23Bmul_29263201485..3203320 [-], 1836161526095type VI secretion protein  TssF
24Bmul_29273203399..3203884 [-], 486161526096type VI secretion system lysozyme-like protein  TssE
25Bmul_29283203947..3204450 [-], 504161526097Hcp1 family type VI secretion system effector  TssD
26Bmul_29293204522..3206012 [-], 1491161526098EvpB family type VI secretion protein  TssC
27Bmul_29303206028..3206543 [-], 516161526099type VI secretion protein  TssB
28Bmul_29313206579..3207211 [-], 633161526100TPR repeat-containing protein 
29Bmul_29323207587..3208198 [+], 612161526101hypothetical protein  TssJ
30Bmul_29333208301..3209647 [+], 1347161526102type VI secretion protein  TssK
31Bmul_29343209644..3210426 [+], 783161526103hypothetical protein  TssL
32Bmul_29353210513..3210920 [-], 408161526104hypothetical protein 
33Bmul_29363211191..3212450 [+], 1260161526105transposase mutator type 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bmul_29283203947..3204450 [-], 504161526097Hcp1 family type VI secretion system effector BCAL0343

Download FASTA format files
Proteins        Genes
N/A
N/A