SecReT6
I. Summary
SecReT6 ID241 insolico
StrainBurkholderia multivorans ATCC 17616
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_010086
Location865751..896456
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bmul_3897861002..861343 [-], 342161520445blue (type1) copper domain-containing protein 
2Bmul_3898861361..862299 [-], 939161520446metallophosphoesterase 
3Bmul_3899862585..864336 [+], 1752161520447binding-protein-dependent transport system inner membrane protein 
4Bmul_3900864348..865700 [+], 1353161520448ABC transporter 
5Bmul_3901865751..866869 [-], 1119161520449ImpA domain-containing protein  TssA
6Bmul_3902866866..867942 [-], 1077161520450type VI secretion protein  TssG
7Bmul_3903867939..869828 [-], 1890161520451type VI secretion protein  TssF
8Bmul_3904869864..870430 [-], 567161520452type VI secretion system lysozyme-like protein  TssE
9Bmul_3905870540..871184 [-], 645161520453hypothetical protein 
10Bmul_3906871723..874404 [+], 2682161520454type VI secretion ATPase  TssH
11Bmul_3907874441..874980 [+], 540161520455type VI secretion protein  TssB
12Bmul_3908875008..876501 [+], 1494161520456EvpB family type VI secretion protein  TssC
13Bmul_3909876594..877079 [+], 486161520457Hcp1 family type VI secretion system effector  TssD
14Bmul_3910877158..877661 [+], 504161520458hypothetical protein  TssJ
15Bmul_3911877856..878383 [+], 528161520459HMG-I and HMG-Y DNA-binding domain-containing protein 
16Bmul_3912878473..879219 [+], 747161520460integrase catalytic region 
17Bmul_3913879239..880489 [+], 1251161520461type VI secretion protein  TssK
18Bmul_3914880551..883088 [+], 2538161520462ImpA family type VI secretion-associated protein  TssI
19Bmul_3915883098..883940 [+], 843161520463hypothetical protein 
20Bmul_3916883937..886495 [+], 2559161520464hypothetical protein 
21Bmul_3917886497..887438 [+], 942161520465hypothetical protein 
22Bmul_3918887820..888455 [+], 636161520466hypothetical protein 
23Bmul_3919888663..889451 [+], 789161520467hypothetical protein 
24Bmul_3920889520..889798 [+], 279161520468PAAR repeat-containing protein  PAAR
25Bmul_3921889798..891093 [+], 1296161520469hypothetical protein  TssL
26Bmul_3922891119..895219 [+], 4101161520470type VI secretion protein IcmF  TssM
27Bmul_3923895239..896456 [+], 1218161520471DotU family type IV/VI secretion system protein  TssL
28Bmul_3924896835..897233 [-], 399161520472hypothetical protein 
29Bmul_3925897277..898569 [-], 1293161520473FAD-dependent pyridine nucleotide-disulfide oxidoreductase 
30Bmul_3926898594..899370 [+], 777161520474TetR family transcriptional regulator 
31Bmul_3927899395..900306 [-], 912161520475LysR family transcriptional regulator 
32Bmul_3928900415..901176 [+], 762161520476short-chain dehydrogenase/reductase SDR 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SciK

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bmul_3909876594..877079 [+], 486161520457Hcp1 family type VI secretion system effector SciK

Download FASTA format files
Proteins        Genes
N/A
N/A