SecReT6
I. Summary
SecReT6 ID244 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location2000692..2012215
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100010
ComponentTssGTssJTssKTssM
Number0002
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A19251997516..1998724 [-], 1209162420753IS285 transposase 
2YpAngola_A19261998809..1999528 [+], 720162418702hypothetical protein 
3YpAngola_A19271999588..1999737 [+], 150162419393hypothetical protein 
4YpAngola_A1928 (phnA)1999904..2000245 [+], 342162421520hypothetical protein 
5YpAngola_A19292000320..2000667 [-], 348162418122hypothetical protein 
6YpAngola_A19302000692..2001171 [-], 480162419228hypothetical protein  TssE
7YpAngola_A19312001236..2002042 [-], 807162419574hypothetical protein  TagJ
8YpAngola_A19332002910..2003170 [-], 261162418687hypothetical protein  PAAR
9YpAngola_A19342003269..2005893 [-], 2625162421327hypothetical protein  TssI
10YpAngola_A19352006220..2006570 [-], 351162418268hypothetical protein  TssM
11YpAngola_A19362006698..2007906 [+], 1209162420289IS285 transposase 
12YpAngola_A1937 (icmF)2007918..2011370 [-], 3453162421893type VI secretion protein IcmF  TssM
13YpAngola_A19382011379..2012215 [-], 837162419405SciP protein  TssL
14YpAngola_A19392012231..2013706 [-], 1476162420917transposase 
15YpAngola_A19402013720..2014130 [-], 411162418106hypothetical protein 
16YpAngola_A19412014340..2014528 [+], 189162419584hypothetical protein 
17YpAngola_A1942 (fabA)2014794..2015312 [-], 5191624203753-hydroxydecanoyl-ACP dehydratase 
18YpAngola_A19432015381..2017132 [-], 1752162421872hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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