SecReT6
I. Summary
SecReT6 ID247 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location3138568..3164533
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110121111
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A29713134276..3135028 [+], 753162420553polyketide biosynthesis enoyl-CoA hydratase 
2YpAngola_A29723135031..3135819 [+], 789162419217hypothetical protein 
3YpAngola_A29733135794..3135913 [+], 120162420574hypothetical protein 
4YpAngola_A29753136014..3136346 [+], 333162419706hypothetical protein 
5YpAngola_A29743136297..3136422 [-], 126162418100hypothetical protein 
6YpAngola_A29763136384..3136632 [+], 249162420427putative acyl carrier protein 
7YpAngola_A29773136785..3137579 [+], 795162420828putative acyltransferase 
8YpAngola_A29783138568..3139068 [+], 501162421474hypothetical protein  TssB
9YpAngola_A29793139117..3140106 [+], 990162421867hypothetical protein  TssC
10YpAngola_A29813141846..3142337 [+], 492162420200hypothetical protein  TssD
11YpAngola_A29823142725..3145367 [+], 2643162419133AAA ATPase  TssH
12YpAngola_A29833145370..3147718 [+], 2349162420635Rhs element Vgr protein  TssI
13YpAngola_A29853150538..3150705 [+], 168162419662hypothetical protein 
14YpAngola_A29863150904..3151044 [-], 141162420430hypothetical protein 
15YpAngola_A29883152651..3153883 [+], 1233162421819hypothetical protein 
16YpAngola_A29893153880..3157302 [+], 3423162420423hypothetical protein  TssM
17YpAngola_A29903157345..3158946 [+], 1602162418269ImpA domain-containing protein  TssA
18YpAngola_A29913158964..3160022 [+], 1059162418765PAAR domain-containing protein  PAAR
19YpAngola_A29923160037..3160492 [+], 456162421104hypothetical protein 
20YpAngola_A29933160713..3162476 [+], 1764162421295hypothetical protein  TssF
21YpAngola_A29943162440..3163525 [+], 1086162418124hypothetical protein  TssG
22YpAngola_A29953163500..3164081 [+], 582162421051hypothetical protein  TssJ
23YpAngola_A29963164081..3164533 [+], 453162419117hypothetical protein  TssE
24YpAngola_A29973164558..3165925 [+], 1368162418939ImpA domain-containing protein  TssA
25YpAngola_A29983166137..3166469 [-], 333162420471hypothetical protein 
26YpAngola_A29993167275..3169038 [+], 1764162419791ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpAngola_A29813141846..3142337 [+], 492162420200hypothetical protein EC042_4529
2YpAngola_A29593120642..3122576 [-], 1935162420277hypothetical protein YPK_3558

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Proteins        Genes
N/A
N/A