SecReT6
I. Summary
SecReT6 ID248 insolico
StrainSorangium cellulosum 'So ce 56'
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010162
Location6996626..7022337
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1sce49766992587..6993144 [-], 558162453252hypothetical protein 
2sce4977 (queA2)6993358..6994383 [-], 1026162453253S-adenosylmethionine--tRNA ribosyltransferase-isomerase 
3sce49786994380..6995192 [-], 813162453254oxidoreductase 
4sce49796995283..6995843 [+], 561162453255DNA-binding protein 
5sce49806995880..6996593 [-], 714162453256hypothetical protein 
6sce49816996626..6998110 [-], 1485162453257hypothetical protein  TssC
7sce49826998114..6998605 [-], 492162453258hypothetical protein  TssB
8sce49836998778..7000466 [-], 1689162453259hypothetical protein  TssA
9sce49847000653..7001627 [-], 975162453260hypothetical protein 
10sce49857002168..7005884 [-], 3717162453261hypothetical protein  TssM
11sce49867005926..7006603 [-], 678162453262hypothetical protein  TssL
12sce49877006638..7007999 [-], 1362162453263hypothetical protein  TssK
13sce49887008181..7008972 [-], 792162453264hypothetical protein  TssJ
14sce4989 (clpA)7009076..7011781 [-], 2706162453265endopeptidase Clp  TssH
15sce4990 (mltD3)7011818..7013689 [-], 1872162453266Slt family transglycosylase 
16sce49917013910..7015202 [+], 1293162453267FHA domain-containing protein  Fha
17sce49927015293..7015985 [+], 693162453268hypothetical protein 
18sce49937016342..7017259 [-], 918162453269hypothetical protein 
19sce49947017795..7018307 [+], 513162453270hypothetical protein  TssD
20sce49957018446..7018931 [+], 486162453271hypothetical protein  TssD
21sce49967018978..7019397 [+], 420162453272hypothetical protein  TssE
22sce49977019471..7021240 [+], 1770162453273hypothetical protein  TssF
23sce49987021204..7022337 [+], 1134162453274hypothetical protein  TssG
24sce49997022410..7023102 [-], 693162453275hypothetical protein 
25sce50007023428..7023973 [+], 546162453276hypothetical protein 
26sce50017024077..7025138 [+], 1062162453277hypothetical protein 
27sce50027025152..7026306 [-], 1155162453278FHA domain-containing protein  Fha
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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