SecReT6
I. Summary
SecReT6 ID249 insolico
StrainSorangium cellulosum 'So ce 56'
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010162
Location12976178..12998494
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1sce932612971542..12972645 [-], 1104162457612protein kinase 
2sce932712972742..12974826 [-], 2085162457613protein kinase 
3sce932812975356..12975823 [+], 468162457614hypothetical protein 
4sce932912976178..12978136 [+], 1959162457615hypothetical protein  TssI
5sce933012978180..12979421 [+], 1242162457616hypothetical protein 
6sce933112979540..12981120 [+], 1581162457617hypothetical protein 
7sce933212981195..12981662 [-], 468162457618hypothetical protein 
8sce933312981763..12982518 [-], 756162457619hypothetical protein 
9sce933412982552..12982932 [-], 381162457620hypothetical protein 
10sce933512982966..12984021 [-], 1056162457621hypothetical protein 
11sce933612984018..12985049 [-], 1032162457622hypothetical protein 
12sce933712985137..12986219 [-], 1083162457623hypothetical protein  TssG
13sce933812986183..12987985 [-], 1803162457624hypothetical protein  TssF
14sce933912987982..12988443 [-], 462162457625hypothetical protein  TssE
15sce934012988498..12988986 [-], 489162457626hypothetical protein  TssD
16sce934112989108..12990595 [-], 1488162457627hypothetical protein  TssC
17sce934212990628..12991134 [-], 507162457628hypothetical protein  TssB
18sce934312991269..12992321 [-], 1053162457629hypothetical protein  TssA
19sce934412992350..12996357 [-], 4008162457630hypothetical protein  TssM
20sce934512996354..12997130 [-], 777162457631hypothetical protein  TssL
21sce934612997151..12998494 [-], 1344162457632hypothetical protein  TssK
22sce934712998574..12999263 [-], 690162457633hypothetical protein 
23sce934812999728..13000663 [+], 936162457634hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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