SecReT6
I. Summary
SecReT6 ID251 insolico
StrainBordetella petrii DSM 12804
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010170
Location4336908..4357739
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bpet40974332125..4332883 [-], 759163858415rhodanese superfamily protein 
2Bpet40984332956..4333483 [-], 528163858416lipoprotein 
3Bpet40994333799..4334671 [+], 873163858417two-component response regulator 
4Bpet41004334675..4336129 [-], 1455163858418hypothetical protein 
5Bpet41014336161..4336865 [-], 705163858419hypothetical protein 
6Bpet41024336908..4340519 [-], 3612163858420hypothetical protein  TssM
7Bpet41034340516..4341799 [-], 1284163858421hypothetical protein  TssL
8Bpet41044341819..4343153 [-], 1335163858422hypothetical protein  TssK
9Bpet41054343212..4343901 [-], 690163858423lipoprotein  TssJ
10Bpet41064343978..4345147 [+], 1170163858424hypothetical protein  Fha
11Bpet41074345165..4347864 [-], 2700163858425ATPase  TssH
12Bpet41084347898..4348242 [-], 345163858426hypothetical protein 
13Bpet41094348274..4348795 [-], 522163858427hypothetical protein 
14Bpet41104348792..4349937 [-], 1146163858428hypothetical protein  TssG
15Bpet41114349940..4350599 [-], 660163858429hypothetical protein 
16Bpet41124350645..4352549 [-], 1905163858430hypothetical protein  TssF
17Bpet41134352549..4353109 [-], 561163858431hypothetical protein  TssE
18Bpet41144353109..4353924 [-], 816163858432hypothetical protein  TagJ
19Bpet41154354033..4354518 [-], 486163858433hypothetical protein  TssD
20Bpet41164354573..4356075 [-], 1503163858434hypothetical protein  TssC
21Bpet41174356094..4356648 [-], 555163858435hypothetical protein  TssB
22Bpet41184356693..4357739 [-], 1047163858436hypothetical protein  TssA
23Bpet41194358084..4359070 [+], 987163858437hypothetical protein 
24Bpet41204359045..4359518 [+], 474163858438ferrodoxin 
25Bpet41214359671..4360210 [-], 540163858439hypothetical protein 
26Bpet41224360343..4360531 [+], 189163858440hypothetical protein 
27Bpet41234360619..4361020 [+], 402163858441endoribonuclease 
28Bpet4124 (alkA)4361108..4361764 [+], 657163858442DNA-3-methyladenine glycosidase II 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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