SecReT6
I. Summary
SecReT6 ID253 insolico
StrainPseudomonas putida GB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010322
Location3606556..3624230
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PputGB1_32173601939..3602748 [+], 810167034214shikimate dehydrogenase 
2PputGB1_32183602753..3604486 [+], 1734167034215fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 
3PputGB1_32193604471..3604791 [+], 321167034216NIPSNAP family protein 
4PputGB1_32203604833..3606515 [+], 1683167034217fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 
5PputGB1_32213606556..3610140 [-], 3585167034218type VI secretion protein IcmF  TssM
6PputGB1_32223610137..3611600 [-], 1464167034219type VI secretion-associated protein  TssA
7PputGB1_32233611588..3612325 [-], 738167034220hypothetical protein 
8PputGB1_32243612561..3613064 [+], 504167034221type VI secretion protein  TssB
9PputGB1_32253613082..3614572 [+], 1491167034222EvpB family type VI secretion protein  TssC
10PputGB1_32263614569..3614979 [+], 411167034223type VI secretion system lysozyme-like protein  TssE
11PputGB1_32273614983..3616749 [+], 1767167034224type VI secretion protein  TssF
12PputGB1_32283616713..3617729 [+], 1017167034225type VI secretion protein  TssG
13PputGB1_32293617726..3618295 [+], 570167034226FHA domain-containing protein  Fha
14PputGB1_32303618292..3619089 [+], 798167034227hypothetical protein  TssJ
15PputGB1_32313619145..3620482 [+], 1338167034228type VI secretion protein  TssK
16PputGB1_32323620484..3621353 [+], 870167034229hypothetical protein  TssL
17PputGB1_32333621473..3621988 [+], 516167034230Hcp1 family type VI secretion system effector  TssD
18PputGB1_32343622062..3624230 [+], 2169167034231ImpA family type VI secretion-associated protein  TssI
19PputGB1_32353624227..3625159 [+], 933167034232hypothetical protein 
20PputGB1_32363625152..3628142 [+], 2991167034233hypothetical protein 
21PputGB1_32373628145..3629035 [+], 891167034234hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PputGB1_32333621473..3621988 [+], 516167034230Hcp1 family type VI secretion system effector ECA2866

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation