SecReT6
I. Summary
SecReT6 ID254 experimental
StrainAcinetobacter baumannii SDF
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010400
Location2061603..2081014
Comment
Functioneffector translocation
T6SS TypeType i; subtype i4b
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABSDF22312056677..2057855 [-], 1179169633780MFS superfamily cyanate transport protein 
2ABSDF2232 (guaD)2057855..2058337 [-], 483169633781guanine deaminase 
3ABSDF22332058353..2059063 [-], 711169633782ankyrin repeat-containing protein 
4ABSDF22342059173..2060024 [+], 852169633783LysR family transcriptional regulator 
5ABSDF22352060027..2060980 [-], 954169633784hypothetical protein 
6ABSDF22362060988..2061590 [-], 603169633785hypothetical protein 
7ABSDF22372061603..2062409 [-], 807169633786hypothetical protein  TssL
8ABSDF22382062427..2063791 [-], 1365169633787hypothetical protein  TssK
9ABSDF22392063808..2064902 [-], 1095169633788hypothetical protein  TssA
10ABSDF22402064926..2067616 [-], 2691169633789ClpA/B-type chaperone  TssH
11ABSDF22412067827..2068090 [-], 264169633790hypothetical protein  PAAR
12ABSDF22422068107..2068874 [-], 768169633791outer membrane lipoprotein  TagL
13ABSDF22432068877..2069872 [-], 996169633792hypothetical protein 
14ABSDF22442069874..2073698 [-], 3825169633793hypothetical protein  TssM
15ABSDF22452073729..2075141 [-], 1413169633794hypothetical protein 
16ABSDF22462075138..2076136 [-], 999169633795hypothetical protein  TssG
17ABSDF22472076100..2077911 [-], 1812169633796hypothetical protein  TssF
18ABSDF22482077928..2078404 [-], 477169633797hypothetical protein  TssE
19ABSDF22492078484..2078987 [-], 504169633798hypothetical protein  TssD
20ABSDF22502079037..2080533 [-], 1497169633799hypothetical protein  TssC
21ABSDF22512080511..2081014 [-], 504169633800hypothetical protein  TssB
22ABSDF22522081031..2081723 [-], 693169633801hypothetical protein 
23ABSDF22532082399..2083211 [-], 813169633802IS5 family transposase 
24ABSDF22542083733..2084953 [-], 1221169633803hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABSDF22492078484..2078987 [-], 504169633798hypothetical protein A1S_1296
Data from experimental literature

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Proteins        Genes
N/A
(1) Weber BS et al. (2013). Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] experimental
 
experimental This literature contains experimental investigation