SecReT6
I. Summary
SecReT6 ID255 insolico
StrainAcinetobacter baumannii AYE
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010410
Location2444389..2463799
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABAYE23952439463..2440641 [-], 1179169796434MFS superfamily cyanate transport protein 
2ABAYE2396 (guaD)2440641..2441123 [-], 483169796435guanine deaminase 
3ABAYE23972441139..2441849 [-], 711169796436ankyrin repeat-containing protein 
4ABAYE23982441959..2442810 [+], 852169796437LysR family transcriptional regulator 
5ABAYE23992442813..2443766 [-], 954169796438hypothetical protein 
6ABAYE24002443774..2444376 [-], 603169796439hypothetical protein 
7ABAYE24012444389..2445195 [-], 807169796440hypothetical protein  TssL
8ABAYE24022445213..2446577 [-], 1365169796441hypothetical protein  TssK
9ABAYE24032446594..2447688 [-], 1095169796442hypothetical protein  TssA
10ABAYE24042447712..2450402 [-], 2691169796443ClpA/B-type chaperone  TssH
11ABAYE24052450612..2450875 [-], 264169796444hypothetical protein  PAAR
12ABAYE24062450892..2451659 [-], 768169796445outer membrane lipoprotein  TagL
13ABAYE24072451662..2452657 [-], 996169796446hypothetical protein 
14ABAYE24082452659..2456483 [-], 3825169796447hypothetical protein  TssM
15ABAYE24092456514..2457926 [-], 1413169796448hypothetical protein 
16ABAYE24102457923..2458921 [-], 999169796449hypothetical protein  TssG
17ABAYE24112458885..2460696 [-], 1812169796450hypothetical protein  TssF
18ABAYE24122460713..2461189 [-], 477169796451hypothetical protein  TssE
19ABAYE24132461269..2461772 [-], 504169796452hypothetical protein  TssD
20ABAYE24142461822..2463318 [-], 1497169796453hypothetical protein  TssC
21ABAYE24152463296..2463799 [-], 504169796454hypothetical protein  TssB
22ABAYE24162463816..2464349 [-], 534169796455hypothetical protein 
23ABAYE24182465596..2465997 [+], 402169796456hypothetical protein 
24ABAYE24192466093..2467037 [+], 945169796457ABC transporter membrane protein 
25ABAYE24202467016..2467918 [+], 903169796458ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABAYE24132461269..2461772 [-], 504169796452hypothetical protein A1S_1296

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Proteins        Genes
N/A
(1) Weber BS et al. (2013). Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] experimental
 
experimental This literature contains experimental investigation