SecReT6
I. Summary
SecReT6 ID261 insolico
StrainPseudomonas putida W619
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010501
Location2772239..2800523
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PputW619_24952767887..2769536 [-], 1650170721676major facilitator transporter 
2PputW619_24962769660..2772176 [-], 2517170721677excinuclease ABC subunit A 
3PputW619_24972772239..2773333 [-], 1095170721678ImpA family type VI secretion-associated protein  TssA
4PputW619_24982773428..2773946 [-], 519170721679Hcp1 family type VI secretion system effector  TssD
5PputW619_24992774090..2776585 [-], 2496170721680OmpA/MotB domain-containing protein  TssM
6PputW619_25002776582..2777490 [-], 909170721681hypothetical protein 
7PputW619_25012777487..2781293 [-], 3807170721682type VI secretion protein IcmF  TssM
8PputW619_25022781324..2782040 [-], 717170721683hypothetical protein  TssL
9PputW619_25032782037..2783380 [-], 1344170721684type VI secretion protein  TssK
10PputW619_25042783377..2784099 [-], 723170721685putative lipoprotein  TssJ
11PputW619_25052784125..2786722 [-], 2598170721686type VI secretion ATPase  TssH
12PputW619_25062786719..2787789 [-], 1071170721687type VI secretion protein  TssG
13PputW619_25072787753..2789573 [-], 1821170721688type VI secretion protein  TssF
14PputW619_25082789573..2790055 [-], 483170721689type VI secretion system lysozyme-like protein  TssE
15PputW619_25092790082..2791584 [-], 1503170721690EvpB family type VI secretion protein  TssC
16PputW619_25102791599..2792132 [-], 534170721691type VI secretion protein  TssB
17PputW619_25112792195..2792944 [-], 750170721692hypothetical protein 
18PputW619_25122793687..2794238 [-], 552170721693hypothetical protein 
19PputW619_25132794369..2795484 [+], 1116170721694ADP-ribosyl-(dinitrogen reductase) hydrolase 
20PputW619_25142796122..2796493 [-], 372170721695hypothetical protein 
21PputW619_25152796885..2797442 [-], 558170721696hypothetical protein 
22PputW619_25162797445..2798461 [-], 1017170721697hypothetical protein 
23PputW619_25172798673..2800523 [+], 1851170721698ImpA family type VI secretion-associated protein  TssI
24PputW619_25182800534..2801115 [+], 582170721699hypothetical protein 
25PputW619_25192801154..2801621 [+], 468170721700hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PputW619_24982773428..2773946 [-], 519170721679Hcp1 family type VI secretion system effector Psyr_4965

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation