SecReT6
I. Summary
SecReT6 ID262 insolico
StrainPseudomonas putida W619
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010501
Location3573595..3603632
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PputW619_32363569438..3570337 [+], 900170722406LysR family transcriptional regulator 
2PputW619_32373570365..3571195 [-], 831170722407AraC family transcriptional regulator 
3PputW619_32383571325..3571843 [+], 519170722408alkylhydroperoxidase 
4PputW619_32393571857..3572111 [+], 255170722409glutaredoxin 3 
5PputW619_32413573595..3574746 [-], 1152170722410OmpA/MotB domain-containing protein  TssA
6PputW619_32423574758..3575204 [-], 447170722411type VI secretion system lysozyme-like protein  TssE
7PputW619_32433575209..3575745 [-], 537170722412hypothetical protein  TssJ
8PputW619_32443575726..3576823 [-], 1098170722413type VI secretion protein  TssG
9PputW619_32453576787..3578556 [-], 1770170722414type VI secretion protein  TssF
10PputW619_32463578580..3580166 [-], 1587170722415type VI secretion-associated protein  TssA
11PputW619_32473580163..3583507 [-], 3345170722416ImcF domain-containing protein  TssM
12PputW619_32483583517..3584749 [-], 1233170722417hypothetical protein 
13PputW619_32493584753..3585016 [-], 264170722418PAAR repeat-containing protein  PAAR
14PputW619_32503585204..3585848 [-], 645170722419hypothetical protein 
15PputW619_32513585832..3588627 [-], 2796170722420hypothetical protein 
16PputW619_32523588657..3588917 [-], 261170722421PAAR repeat-containing protein  PAAR
17PputW619_32533589399..3592068 [-], 2670170722422hypothetical protein 
18PputW619_32543592074..3594437 [-], 2364170722423ImpA family type VI secretion-associated protein  TssI
19PputW619_32553594440..3597094 [-], 2655170722424type VI secretion ATPase  TssH
20PputW619_32563597244..3597747 [-], 504170722425Hcp1 family type VI secretion system effector  TssD
21PputW619_32573597764..3599494 [-], 1731170722426OmpA/MotB domain-containing protein  TagL
22PputW619_32583599500..3600168 [-], 669170722427hypothetical protein  TssL
23PputW619_32593600177..3601532 [-], 1356170722428type VI secretion protein  TssK
24PputW619_32603601556..3603094 [-], 1539170722429EvpB family type VI secretion protein  TssC
25PputW619_32613603129..3603632 [-], 504170722430type VI secretion protein  TssB
26PputW619_32623604429..3604800 [+], 372170722431IstB ATP binding domain-containing protein 
27PputW619_32653606401..3606670 [-], 270170722432hypothetical protein 
28PputW619_32673607364..3607513 [-], 150170722433hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PputW619_32563597244..3597747 [-], 504170722425Hcp1 family type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation