SecReT6
I. Summary
SecReT6 ID263 insolico
StrainShewanella woodyi ATCC 51908
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010506
Location3068198..3091540
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Swoo_25093063977..3064903 [-], 927170726855hypothetical protein 
2Swoo_25103064900..3065919 [-], 1020170726856hypothetical protein 
3Swoo_25113065997..3066803 [-], 807170726857ankyrin 
4Swoo_25123066803..3068188 [-], 1386170726858PAAR repeat-containing protein  PAAR
5Swoo_25133068198..3070246 [-], 2049170726859ImpA family type VI secretion-associated protein  TssI
6Swoo_25143070518..3071036 [-], 519170726860Hcp1 family type VI secretion system effector  TssD
7Swoo_25153071256..3072461 [-], 1206170726861hypothetical protein  TssA
8Swoo_25163072533..3076096 [-], 3564170726862type VI secretion protein IcmF  TssM
9Swoo_25173076114..3077517 [-], 1404170726863type VI secretion-associated protein  TssA
10Swoo_25183077522..3078163 [-], 642170726864hypothetical protein 
11Swoo_25193078163..3079716 [-], 1554170726865putative sigma-54 specific transcriptional regulator 
12Swoo_25203079716..3082307 [-], 2592170726866type VI secretion ATPase  TssH
13Swoo_25213082317..3083102 [-], 786170726867hypothetical protein  TssL
14Swoo_25223083105..3084439 [-], 1335170726868type VI secretion protein  TssK
15Swoo_25233084442..3084972 [-], 531170726869hypothetical protein  TssJ
16Swoo_25243084972..3086246 [-], 1275170726870FHA domain-containing protein  Fha
17Swoo_25253086315..3087322 [-], 1008170726871type VI secretion protein  TssG
18Swoo_25263087286..3089052 [-], 1767170726872type VI secretion protein  TssF
19Swoo_25273089055..3089480 [-], 426170726873type VI secretion system lysozyme-like protein  TssE
20Swoo_25283089487..3090962 [-], 1476170726874EvpB family type VI secretion protein  TssC
21Swoo_25293091052..3091540 [-], 489170726875type VI secretion protein  TssB
22Swoo_25303092378..3095068 [+], 2691170726876N-acetyltransferase GCN5 
23Swoo_25313095138..3096181 [-], 1044170726877diguanylate cyclase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VCA0017

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Swoo_25143070518..3071036 [-], 519170726860Hcp1 family type VI secretion system effector VCA0017

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Proteins        Genes
N/A
N/A