SecReT6
I. Summary
SecReT6 ID265 insolico
StrainLeptothrix cholodnii SP-6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010524
Location4540240..4588656
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Lcho_40484535262..4535933 [-], 672171060716hypothetical protein 
2Lcho_4049 (pyrE)4535930..4536625 [-], 696171060717orotate phosphoribosyltransferase 
3Lcho_40504536641..4537429 [+], 789171060718exodeoxyribonuclease III Xth 
4Lcho_40514537492..4538628 [+], 1137171060719hypothetical protein 
5Lcho_40524538822..4539487 [+], 666171060720hypothetical protein 
6Lcho_40534539528..4540166 [+], 639171060721beta-lactamase domain-containing protein 
7Lcho_40544540240..4540833 [+], 594171060722hypothetical protein  TssJ
8Lcho_40554540844..4542181 [+], 1338171060723type VI secretion protein  TssK
9Lcho_40564542212..4543594 [+], 1383171060724hypothetical protein  TssL
10Lcho_40574543591..4547253 [+], 3663171060725type VI secretion protein IcmF  TssM
11Lcho_40584547278..4547973 [+], 696171060726hypothetical protein 
12Lcho_40594547985..4549958 [+], 1974171060727serine/threonine protein kinase 
13Lcho_40604550007..4550717 [+], 711171060728peptidase M15A 
14Lcho_40614550724..4551104 [-], 381171060729glyoxalase/bleomycin resistance protein/dioxygenase 
15Lcho_40624551142..4551744 [-], 603171060730OmpA/MotB domain-containing protein  TagL
16Lcho_40634551741..4552508 [-], 768171060731protein serine/threonine phosphatase 
17Lcho_40644552514..4554256 [-], 1743171060732FHA domain-containing protein  Fha
18Lcho_40654554537..4555172 [+], 636171060733hypothetical protein 
19Lcho_40664555185..4556816 [-], 1632171060734serine/threonine protein kinase 
20Lcho_40674556834..4557706 [-], 873171060735sensor protein 
21Lcho_40684557822..4558019 [-], 198171060736hypothetical protein 
22Lcho_40694558033..4562034 [-], 4002171060737PAS/PAC sensor hybrid histidine kinase 
23Lcho_4070 (trkA)4562267..4563682 [+], 1416171060738potassium transporter peripheral membrane protein 
24Lcho_40714563703..4565160 [+], 1458171060739cation transporter 
25Lcho_40724565176..4566525 [-], 1350171060740hypothetical protein 
26Lcho_40734566531..4567652 [-], 1122171060741hypothetical protein 
27Lcho_40744567656..4568465 [-], 810171060742hypothetical protein 
28Lcho_40754568465..4569064 [-], 600171060743hypothetical protein 
29Lcho_40764569075..4569821 [-], 747171060744hypothetical protein 
30Lcho_40774569808..4570995 [-], 1188171060745hypothetical protein 
31Lcho_40784571006..4571467 [-], 462171060746hypothetical protein 
32Lcho_40794571480..4571971 [-], 492171060747hypothetical protein 
33Lcho_40804571976..4574291 [-], 2316171060748ImpA family type VI secretion-associated protein  TssI
34Lcho_40814574388..4575758 [-], 1371171060749type 12 methyltransferase 
35Lcho_40824575815..4576696 [-], 882171060750hypothetical protein 
36Lcho_40834576776..4577921 [-], 1146171060751hypothetical protein 
37Lcho_40844577943..4580693 [-], 2751171060752type VI secretion ATPase  TssH
38Lcho_40854580698..4581831 [-], 1134171060753type VI secretion protein  TssG
39Lcho_40864581857..4583773 [-], 1917171060754type VI secretion protein  TssF
40Lcho_40874583770..4584324 [-], 555171060755type VI secretion system lysozyme-like protein  TssE
41Lcho_40884584347..4584871 [-], 525171060756Hcp1 family type VI secretion system effector  TssD
42Lcho_40894584916..4585401 [-], 486171060757hypothetical protein  TssD
43Lcho_40904585545..4587041 [-], 1497171060758EvpB family type VI secretion protein  TssC
44Lcho_40914587063..4587569 [-], 507171060759type VI secretion protein  TssB
45Lcho_40924587619..4588656 [-], 1038171060760ImpA family type VI secretion-associated protein  TssA
46Lcho_40934588782..4591622 [-], 2841171060761filamentous hemagglutinin outer membrane protein 
47Lcho_40944591633..4593270 [-], 1638171060762polypeptide-transport-associated domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Lcho_40894584916..4585401 [-], 486171060757hypothetical protein PA0085

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Proteins        Genes
N/A
N/A