SecReT6
I. Summary
SecReT6 ID266 insolico
StrainCupriavidus taiwanensis LMG 19424
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_010528
Location620716..647856
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RALTA_A0599 (fdsA)616708..619587 [+], 2880194288744NAD-dependent formate dehydrogenase subunit alpha 
2RALTA_A0600 (fdsC)619603..620478 [+], 876194288745formate dehydrogenase accessory protein 
3RALTA_A0601 (fdsD)620475..620699 [+], 225194288746NAD-dependent formate dehydrogenase subunit delta 
4RALTA_A0602 (sciA)620716..621777 [-], 1062194288747replication/virulence associated protein; impa-related n-terminal domain  TssA
5RALTA_A0603 (sciB)621774..622814 [-], 1041194288748replication/virulence associated protein; duf1305  TssG
6RALTA_A0604 (sciC)622817..624697 [-], 1881194288749replication/virulence associated protein; duf879  TssF
7RALTA_A0605 (sciD)624702..625223 [-], 522194288750replication/virulence associated protein; duf1316  TssE
8RALTA_A0606 (sciF)625216..625953 [-], 738194288751replication/virulence associated protein 
9RALTA_A0607 (sciG)626362..629100 [+], 2739194288752replication/virulence associated protein; ATP-dependent protease clpa/b chaperone motif  TssH
10RALTA_A0608 (sciH)629117..629650 [+], 534194288753replication/virulence associated protein; duf770  TssB
11RALTA_A0609 (sciI)629700..631193 [+], 1494194288754replication/virulence associated protein; duf877  TssC
12RALTA_A0610 (sciK)631322..631807 [+], 486194288755hcp-related (hemolysin-coregulated protein) protein; replication/virulence associated protein; duf796  TssD
13RALTA_A0611 (vrgS)631938..634544 [+], 2607194288756replication/virulence associated protein; vgr-related  TssI
14RALTA_A0612634578..636917 [+], 2340194288757hypothetical protein 
15RALTA_A0613636914..638107 [+], 1194194288758exported protein of unknown function 
16RALTA_A0614638124..638480 [+], 357194288759hypothetical protein 
17RALTA_A0615638484..640043 [+], 1560194288760exported protein of unknown function 
18RALTA_A0616640111..640530 [+], 420194288761hypothetical protein 
19RALTA_A0617640601..640861 [+], 261194288762hypothetical protein  PAAR
20RALTA_A0618 (sciN)640858..641397 [+], 540194288763replication/virulence associated protein; exported protein  TssJ
21RALTA_A0619 (sciO)641402..642745 [+], 1344194288764replication/virulence associated protein  TssK
22RALTA_A0620 (sciP)642742..644019 [+], 1278194288765replication/virulence associated protein; outer membrane protein, ompa family membrane protein  TssL
23RALTA_A0621 (sciS)644032..647856 [+], 3825194288766replication related protein  TssM
24RALTA_A0622 (sciT)647835..648521 [+], 687194288767replication/virulence associated protein 
25RALTA_A0623648569..649264 [-], 696194288768transglycosylase 
26RALTA_A0624649308..650825 [-], 1518194288769sodium:sulfate symporter 
27RALTA_A0626651134..651379 [+], 246194288770hypothetical protein 
28RALTA_A0627651417..652241 [+], 825194288771hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RALTA_A0610(sciK)631322..631807 [+], 486194288755hcp-related (hemolysin-coregulated protein) protein; replication/virulence associated protein; duf796 ROD_27741

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Proteins        Genes
N/A
N/A