SecReT6
I. Summary
SecReT6 ID268 insolico
StrainBurkholderia ambifaria MC40-6
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_010551
Location430361..475470
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BamMC406_0378426299..426823 [+], 525172059443hypothetical protein 
2BamMC406_0381428962..429165 [+], 204172059444hypothetical protein 
3BamMC406_0382429248..430048 [-], 801172059445extracellular solute-binding protein 
4BamMC406_0383430361..433534 [+], 3174172059446ImpA family type VI secretion-associated protein  TssI
5BamMC406_0384433585..438237 [+], 4653172059447YD repeat-containing protein 
6BamMC406_0385438245..438649 [+], 405172059448hypothetical protein 
7BamMC406_0388440771..440941 [+], 171172059449hypothetical protein 
8BamMC406_0389441179..441742 [+], 564172059450hypothetical protein 
9BamMC406_0390442312..442695 [+], 384172059451hypothetical protein 
10BamMC406_0391443031..443510 [+], 480172059452hypothetical protein 
11BamMC406_0392443691..444116 [+], 426172059453hypothetical protein 
12BamMC406_0393444237..444488 [+], 252172059454hypothetical protein 
13BamMC406_0394444482..444817 [+], 336172059455hypothetical protein 
14BamMC406_0395445210..445518 [+], 309172059456hypothetical protein 
15BamMC406_0396445535..445789 [+], 255172059457hypothetical protein 
16BamMC406_0397446095..446460 [+], 366172059458hypothetical protein 
17BamMC406_0398446554..447336 [-], 783172059459hypothetical protein  TssL
18BamMC406_0399447333..448679 [-], 1347172059460type VI secretion protein  TssK
19BamMC406_0400448784..449392 [-], 609172059461hypothetical protein  TssJ
20BamMC406_0401449769..450407 [+], 639172059462hypothetical protein 
21BamMC406_0402450452..450967 [+], 516172059463type VI secretion protein  TssB
22BamMC406_0403450983..452473 [+], 1491172059464EvpB family type VI secretion protein  TssC
23BamMC406_0404452544..453047 [+], 504172059465Hcp1 family type VI secretion system effector  TssD
24BamMC406_0405453110..453595 [+], 486172059466type VI secretion system lysozyme-like protein  TssE
25BamMC406_0406453673..455508 [+], 1836172059467type VI secretion protein  TssF
26BamMC406_0407455472..456572 [+], 1101172059468type VI secretion protein  TssG
27BamMC406_0408456616..459285 [+], 2670172059469type VI secretion ATPase  TssH
28BamMC406_0409459325..460446 [+], 1122172059470ImpA family type VI secretion-associated protein  TssA
29BamMC406_0410460526..463087 [+], 2562172059471ImpA family type VI secretion-associated protein  TssI
30BamMC406_0411463087..464109 [+], 1023172059472hypothetical protein 
31BamMC406_0412464096..464254 [+], 159172059473hypothetical protein 
32BamMC406_0413464247..464402 [+], 156172059474hypothetical protein 
33BamMC406_0414464414..465265 [+], 852172059475hypothetical protein 
34BamMC406_0415465258..467552 [+], 2295172059476hypothetical protein 
35BamMC406_0416467739..468674 [-], 936172059477hypothetical protein 
36BamMC406_0417468873..469571 [-], 699172059478hypothetical protein 
37BamMC406_0418469588..470538 [-], 951172059479OmpA/MotB domain-containing protein  TagL
38BamMC406_0419470543..471532 [-], 990172059480hypothetical protein 
39BamMC406_0420471529..475470 [-], 3942172059481type VI secretion protein IcmF  TssM
40BamMC406_0421475772..476617 [-], 846172059482peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
41BamMC406_0422476739..477701 [+], 963172059483hypothetical protein 
42BamMC406_0423477869..478942 [+], 1074172059484Mg2 transporter protein CorA family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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