I. Summary
SecReT6 ID269 insolico
StrainBurkholderia ambifaria MC40-6
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BamMC406_30033324578..3325984 [-], 1407172062043integral membrane sensor signal transduction histidine kinase 
2BamMC406_30043326042..3326680 [+], 639172062044hypothetical protein 
3BamMC406_30053326638..3327537 [+], 900172062045acetylglutamate kinase 
4BamMC406_30063327534..3328325 [+], 792172062046pyrimidine 5'-nucleotidase 
5BamMC406_3007 (slmA)3328292..3328957 [+], 666172062047nucleoid occlusion protein 
6BamMC406_30083329037..3331700 [-], 2664172062048type VI secretion ATPase  TssH
7BamMC406_30093332219..3333238 [+], 1020172062049hypothetical protein 
8BamMC406_30103333225..3334079 [+], 855172062050virulence protein SciE type  TagJ
9BamMC406_30113334063..3334584 [+], 522172062051type VI secretion system lysozyme-like protein  TssE
10BamMC406_30123334586..3336466 [+], 1881172062052type VI secretion protein  TssF
11BamMC406_30133336470..3337531 [+], 1062172062053type VI secretion protein  TssG
12BamMC406_30143337528..3338586 [+], 1059172062054ImpA domain-containing protein  TssA
13BamMC406_30153338628..3339659 [+], 1032172062055fimbrial protein 
14BamMC406_30163339699..3341054 [+], 1356172062056hypothetical protein 
15BamMC406_30173341168..3344617 [-], 3450172062057YD repeat-containing protein 
16BamMC406_30183344638..3344904 [-], 267172062058PAAR repeat-containing protein  PAAR
17BamMC406_30193344989..3348135 [-], 3147172062059ImpA family type VI secretion-associated protein  TssI
18BamMC406_30203348242..3348736 [-], 495172062060hypothetical protein 
19BamMC406_30213348786..3349571 [-], 786172062061putative cytoplasmic protein 
20BamMC406_30223349580..3353488 [-], 3909172062062type VI secretion protein IcmF  TssM
21BamMC406_30233353503..3354807 [-], 1305172062063hypothetical protein  TssL
22BamMC406_30243354804..3356153 [-], 1350172062064type VI secretion protein  TssK
23BamMC406_30253356155..3356697 [-], 543172062065putative lipoprotein  TssJ
24BamMC406_30263356832..3357314 [-], 483172062066hypothetical protein  TssD
25BamMC406_30273357516..3359015 [-], 1500172062067EvpB family type VI secretion protein  TssC
26BamMC406_30283359063..3359599 [-], 537172062068type VI secretion protein  TssB
27BamMC406_30293359955..3361622 [-], 1668172062069OmpA/MotB domain-containing protein  TagL
28BamMC406_30303361619..3362323 [-], 705172062070hypothetical protein  TssL
29BamMC406_30313362358..3362921 [-], 564172062071fimbrial protein 
30BamMC406_30323362962..3365754 [-], 2793172062072fimbrial biogenesis outer membrane usher protein 
31BamMC406_30333365791..3366522 [-], 732172062073Pili assembly chaperone, N-terminal 
32BamMC406_30343366612..3367154 [-], 543172062074fimbrial protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BamMC406_0404452544..453047 [+], 504172059465Hcp1 family type VI secretion system effector BCAL0343

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Proteins        Genes