SecReT6
I. Summary
SecReT6 ID270 insolico
StrainBurkholderia ambifaria MC40-6
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_010552
Location588351..616025
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BamMC406_3639583804..585837 [+], 2034172062671NADH:flavin oxidoreductase/NADH oxidase 
2BamMC406_3640586017..586421 [-], 405172062672hypothetical protein 
3BamMC406_3641586574..587467 [-], 894172062673LysR family transcriptional regulator 
4BamMC406_3642587554..588339 [+], 786172062674ribosyldihydronicotinamide dehydrogenase (quinone) 
5BamMC406_3643588351..588773 [-], 423172062675type VI secretion system lysozyme-like protein  TssE
6BamMC406_3644588770..591478 [-], 2709172062676type VI secretion ATPase  TssH
7BamMC406_3645591574..592059 [-], 486172062677Hcp1 family type VI secretion system effector  TssD
8BamMC406_3646592154..593917 [-], 1764172062678OmpA/MotB domain-containing protein  TagL
9BamMC406_3647593929..594603 [-], 675172062679hypothetical protein  TssL
10BamMC406_3648594684..596033 [-], 1350172062680type VI secretion protein  TssK
11BamMC406_3649596614..597126 [+], 513172062681type VI secretion protein  TssB
12BamMC406_3650597200..598750 [+], 1551172062682EvpB family type VI secretion protein  TssC
13BamMC406_3651598829..601168 [+], 2340172062683Rhs element Vgr protein  TssI
14BamMC406_3652601178..603805 [+], 2628172062684chitinase-like protein 
15BamMC406_3653603807..604364 [+], 558172062685hypothetical protein 
16BamMC406_3654605906..607141 [+], 1236172062686hypothetical protein 
17BamMC406_3655607138..610956 [+], 3819172062687hypothetical protein  TssM
18BamMC406_3656610965..612548 [+], 1584172062688type VI secretion-associated protein  TssA
19BamMC406_3657612558..614372 [+], 1815172062689type VI secretion protein  TssF
20BamMC406_3658614369..615493 [+], 1125172062690type VI secretion protein  TssG
21BamMC406_3659615507..616025 [+], 519172062691hypothetical protein  TssJ
22BamMC406_3660616090..616380 [-], 291172062692muconolactone delta-isomerase 
23BamMC406_3661616424..617326 [-], 903172062693catechol 1,2-dioxygenase 
24BamMC406_3662617363..618496 [-], 1134172062694muconate and chloromuconate cycloisomerase 
25BamMC406_3663618588..619478 [+], 891172062695LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BamMC406_3645591574..592059 [-], 486172062677Hcp1 family type VI secretion system effector EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A