SecReT6
I. Summary
SecReT6 ID271 insolico
StrainBurkholderia ambifaria MC40-6
Repliconplasmid pBMC401 [Browse all T6SS(s) in this replicon]
AccessionNC_010553
Location167500..200898
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BamMC406_6667162652..163275 [+], 624172064670fimbrial protein 
2BamMC406_6668163366..164100 [+], 735172064671Pili assembly chaperone, N-terminal 
3BamMC406_6669164304..166874 [+], 2571172064672fimbrial biogenesis outer membrane usher protein 
4BamMC406_6670166920..167465 [+], 546172064673fimbrial protein 
5BamMC406_6671167500..168183 [+], 684172064674hypothetical protein  TssL
6BamMC406_6672168180..169838 [+], 1659172064675OmpA/MotB domain-containing protein  TagL
7BamMC406_6673170205..170762 [+], 558172064676type VI secretion protein  TssB
8BamMC406_6674170814..172313 [+], 1500172064677EvpB family type VI secretion protein  TssC
9BamMC406_6675172518..173000 [+], 483172064678hypothetical protein  TssD
10BamMC406_6676173099..173638 [+], 540172064679putative lipoprotein  TssJ
11BamMC406_6677173642..174991 [+], 1350172064680type VI secretion protein  TssK
12BamMC406_6678174988..176298 [+], 1311172064681hypothetical protein  TssL
13BamMC406_6679176307..180215 [+], 3909172064682type VI secretion protein IcmF  TssM
14BamMC406_6680180212..181018 [+], 807172064683putative cytoplasmic protein 
15BamMC406_6681180999..181562 [+], 564172064684hypothetical protein 
16BamMC406_6682181653..184826 [+], 3174172064685type VI secretion system Vgr family protein  TssI
17BamMC406_6683184938..185204 [+], 267172064686PAAR repeat-containing protein  PAAR
18BamMC406_6684185225..188674 [+], 3450172064687YD repeat-containing protein 
19BamMC406_6685188880..190232 [-], 1353172064688hypothetical protein 
20BamMC406_6686190263..191291 [-], 1029172064689fimbrial protein 
21BamMC406_6687191342..192406 [-], 1065172064690ImpA domain-containing protein  TssA
22BamMC406_6688192403..193464 [-], 1062172064691type VI secretion protein  TssG
23BamMC406_6689193468..195348 [-], 1881172064692type VI secretion protein  TssF
24BamMC406_6690195350..195871 [-], 522172064693type VI secretion system lysozyme-related protein  TssE
25BamMC406_6691195855..196715 [-], 861172064694virulence protein SciE type  TagJ
26BamMC406_6692196696..197721 [-], 1026172064695hypothetical protein 
27BamMC406_6693198229..200898 [+], 2670172064696type VI secretion ATPase  TssH
28BamMC406_6695202460..202663 [-], 204172064697hypothetical protein 
29BamMC406_6696202908..203204 [-], 297172064698histone family protein nucleoid-structuring protein H-NS 
30BamMC406_6697203604..203933 [-], 330172064699hypothetical protein 
31BamMC406_6698203943..204506 [-], 564172064700hypothetical protein 
32BamMC406_6700205118..205513 [-], 396172064701hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A