SecReT6
I. Summary
SecReT6 ID273 insolico
StrainAcinetobacter baumannii ACICU
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010611
Location1397691..1417101
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ACICU_012911393570..1394451 [-], 882184157611nitrate/sulfonate/bicarbonate ABC transporter ATPase 
2ACICU_012921394451..1395395 [-], 945184157612nitrate/sulfonate/bicarbonate ABC transporter permease 
3ACICU_012931395491..1395892 [-], 402184157613hypothetical protein 
4ACICU_012941396981..1397193 [+], 213184157614hypothetical protein 
5ACICU_012951397168..1397674 [+], 507184157615hypothetical protein 
6ACICU_012961397691..1398194 [+], 504184157616hypothetical protein  TssB
7ACICU_012971398187..1399668 [+], 1482184157617hypothetical protein  TssC
8ACICU_012981399718..1400221 [+], 504184157618hemolysin-coregulated protein  TssD
9ACICU_012991400301..1400777 [+], 477184157619hypothetical protein  TssE
10ACICU_013001400794..1402605 [+], 1812184157620hypothetical protein  TssF
11ACICU_013011402569..1403567 [+], 999184157621hypothetical protein  TssG
12ACICU_013021403564..1404976 [+], 1413184157622hypothetical protein 
13ACICU_013031405007..1408831 [+], 3825184157623hypothetical protein  TssM
14ACICU_013041408869..1409828 [+], 960184157624hypothetical protein 
15ACICU_013051409831..1410598 [+], 768184157625outer membrane protein  TagL
16ACICU_013061410615..1410878 [+], 264184157626hypothetical protein  PAAR
17ACICU_013071411100..1413778 [+], 2679184157627ATPase  TssH
18ACICU_013081413802..1414896 [+], 1095184157628hypothetical protein  TssA
19ACICU_013091414913..1416277 [+], 1365184157629hypothetical protein  TssK
20ACICU_013101416295..1417101 [+], 807184157630hypothetical protein  TssL
21ACICU_013111417114..1417716 [+], 603184157631hypothetical protein 
22ACICU_013121417784..1418677 [+], 894184157632hypothetical protein 
23ACICU_013131418680..1419531 [-], 852184157633transcriptional regulator 
24ACICU_013141419683..1420351 [+], 669184157634ankyrin repeat-containing protein 
25ACICU_013151420367..1420843 [+], 477184157635cytosine/adenosine deaminase 
26ACICU_013161420848..1422026 [+], 1179184157636cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ACICU_012981399718..1400221 [+], 504184157618hemolysin-coregulated protein A1S_1296

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Proteins        Genes
N/A
N/A