SecReT6
SecReT6
I. Summary
SecReT6 ID274 insolico
StrainBurkholderia phymatum STM815
Repliconplasmid pBPHY01 [Browse all T6SS(s) in this replicon]
AccessionNC_010625
Location510771..535444
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bphy_5975506119..507693 [+], 1575186470766histidine kinase 
2Bphy_5976507744..509531 [-], 1788186470767hypothetical protein 
3Bphy_5977509595..509987 [-], 393186470768hypothetical protein 
4Bphy_5978510771..511343 [+], 573186470769type VI secretion protein  TssB
5Bphy_5979511410..512918 [+], 1509186470770EvpB family type VI secretion protein  TssC
6Bphy_5980512987..513475 [+], 489186470771hypothetical protein  TssD
7Bphy_5981513551..514006 [+], 456186470772type VI secretion system lysozyme-like protein  TssE
8Bphy_5982513996..515765 [+], 1770186470773type VI secretion protein  TssF
9Bphy_5983515720..516853 [+], 1134186470774type VI secretion protein  TssG
10Bphy_5984516865..519594 [+], 2730186470775type VI secretion ATPase  TssH
11Bphy_5985519599..521524 [+], 1926186470776ImpA family type VI secretion-associated protein  TssI
12Bphy_5986521533..522255 [+], 723186470777hypothetical protein 
13Bphy_5987522278..522664 [+], 387186470778hypothetical protein 
14Bphy_5988522708..522953 [+], 246186470779hypothetical protein 
15Bphy_5989522967..523941 [+], 975186470780extracellular solute-binding protein 
16Bphy_5990523973..525247 [+], 1275186470781sodium:dicarboxylate symporter 
17Bphy_5991525256..525957 [+], 702186470782aspartate racemase 
18Bphy_5992525954..527378 [+], 1425186470783sodium:dicarboxylate symporter 
19Bphy_5993527375..527887 [+], 513186470784hypothetical protein 
20Bphy_5994527884..529218 [+], 1335186470785type VI secretion protein  TssK
21Bphy_5995529280..530032 [+], 753186470786hypothetical protein  TssL
22Bphy_5996530121..534299 [+], 4179186470787IcmF-like protein  TssM
23Bphy_5997534296..535444 [+], 1149186470788ImpA family type VI secretion-associated protein  TssA
24Bphy_5998535602..536714 [+], 1113186470789hypothetical protein 
25Bphy_5999536930..537469 [+], 540186470790AraC family transcriptional regulator 
26Bphy_6001538103..538375 [-], 273186470791hypothetical protein 
27Bphy_6002538530..538664 [-], 135186470792hypothetical protein 
28Bphy_6003538809..539006 [-], 198186470793hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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