SecReT6
SecReT6
I. Summary
SecReT6 ID276 insolico
StrainBurkholderia phymatum STM815
Repliconplasmid pBPHY01 [Browse all T6SS(s) in this replicon]
AccessionNC_010625
Location1673089..1686527
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110001
ComponentTssGTssJTssKTssM
Number1000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bphy_70101668895..1669593 [-], 699186471744ABC transporter 
2Bphy_70111669596..1670732 [-], 1137186471745hypothetical protein 
3Bphy_70121670801..1671271 [-], 471186471746UspA domain-containing protein 
4Bphy_70131671857..1673092 [-], 1236186471747hypothetical protein 
5Bphy_70141673089..1674174 [-], 1086186471748ImpA domain-containing protein  TssA
6Bphy_70151674171..1675247 [-], 1077186471749type VI secretion protein  TssG
7Bphy_70161675247..1675870 [-], 624186471750hypothetical protein 
8Bphy_70171675944..1677233 [-], 1290186471751hypothetical protein  TssL
9Bphy_70181677230..1677508 [-], 279186471752PAAR repeat-containing protein  PAAR
10Bphy_70191677605..1678570 [-], 966186471753hypothetical protein 
11Bphy_70201678572..1681142 [-], 2571186471754hypothetical protein 
12Bphy_70211681139..1681993 [-], 855186471755hypothetical protein 
13Bphy_70221682001..1684541 [-], 2541186471756ImpA family type VI secretion-associated protein  TssI
14Bphy_70231684626..1686527 [-], 1902186471757type VI secretion protein  TssF
15Bphy_70241686902..1688593 [-], 1692186471758transposition protein, TnsD-like protein 
16Bphy_70251688873..1689931 [-], 1059186471759Tn7-like transposition protein C 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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