SecReT6
I. Summary
SecReT6 ID282 insolico
StrainBordetella avium 197N
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010645
Location268341..301427
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BAV0256 (proB)263485..264618 [-], 1134187476770gamma-glutamyl kinase 
2BAV0257 (obgE)264697..265815 [-], 1119187476771GTPase ObgE 
3BAV0258 (rpmA)265998..266258 [-], 26118747677250S ribosomal protein L27 
4BAV0259 (rplU)266291..266602 [-], 31218747677350S ribosomal protein L21 
5BAV0260 (cel)266947..267912 [+], 966187476774octaprenyl-diphosphate synthase 
6BAV0261268341..268616 [-], 276187476775hypothetical protein 
7BAV0262268628..270964 [-], 2337187476776bifunctional protein include phospholipase and oxidoreductase 
8BAV0263 (bdhA)271008..271793 [-], 7861874767773-hydroxybutyrate dehydrogenase 
9BAV0264 (adc)271841..272581 [-], 741187476778acetoacetate decarboxylase 
10BAV0265273187..273738 [+], 552187476779hypothetical protein  TssB
11BAV0266273790..275283 [+], 1494187476780hypothetical protein  TssC
12BAV0267275344..275820 [+], 477187476781hypothetical protein  TssD
13BAV0268275829..276233 [+], 405187476782hypothetical protein  TssE
14BAV0269276250..277992 [+], 1743187476783hypothetical protein  TssF
15BAV0270277989..278903 [+], 915187476784hypothetical protein  TssG
16BAV0271278906..281524 [+], 2619187476785ATPase with chaperone activity  TssH
17BAV0272281517..283367 [+], 1851187476786hypothetical protein  TssI
18BAV0273283367..283996 [+], 630187476787hypothetical protein 
19BAV0274283993..284379 [+], 387187476788hypothetical protein 
20BAV0275284383..284535 [+], 153187476789membrane protein 
21BAV0276284535..285467 [+], 933187476790extracellular solute-binding protein 
22BAV0277285511..286755 [+], 1245187476791transport protein 
23BAV0278286850..288160 [+], 1311187476792transport protein 
24BAV0279288157..288609 [+], 453187476793lipoprotein 
25BAV0280288651..289940 [+], 1290187476794hypothetical protein  TssK
26BAV0281289937..290680 [+], 744187476795hypothetical protein  TssL
27BAV0282290714..294478 [+], 3765187476796hypothetical protein  TssM
28BAV0283294475..295488 [+], 1014187476797hypothetical protein  TssA
29BAV0284295613..296482 [+], 870187476798hypothetical protein 
30BAV0285296612..298021 [-], 1410187476799amidase 
31BAV0286298069..299295 [-], 1227187476800branched-chain amino acid binding protein 
32BAV0287299415..300341 [+], 927187476801LysR family transcriptional regulator 
33BAV0288300438..301427 [+], 990187476802branched-chain amino acid transport permease 
34BAV0289301438..302319 [+], 882187476803branched-chain amino acid transport permease 
35BAV0290302333..303040 [+], 708187476804branched-chain amino acid ABC transporter ATP-binding protein 
36BAV0291303042..303782 [+], 741187476805branched-chain amino acid ABC transporter ATP-binding protein 
37BAV0292303898..304734 [-], 837187476806metallo-phosphoesterase 
38BAV0293304769..305713 [-], 945187476807membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation