SecReT6
I. Summary
SecReT6 ID283 insolico
StrainBurkholderia phytofirmans PsJN
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_010676
Location1034218..1054147
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bphyt_49051029756..1030007 [+], 252187919608hypothetical protein 
2Bphyt_49061030272..1031378 [+], 1107187919609TrkA-N domain-containing protein 
3Bphyt_49071031424..1032359 [+], 936187919610ornithine cyclodeaminase/mu-crystallin 
4Bphyt_49081032663..1034144 [+], 1482187919611glucose-6-phosphate 1-dehydrogenase 
5Bphyt_49091034218..1035000 [-], 783187919612type IV / VI secretion system protein, DotU family  TssL
6Bphyt_49101034997..1036343 [-], 1347187919613type VI secretion protein  TssK
7Bphyt_49111036452..1037084 [-], 633187919614type VI secretion protein  TssJ
8Bphyt_49121037439..1038122 [+], 684187919615tetratricopeptide repeat-containing protein 
9Bphyt_49131038159..1038707 [+], 549187919616type VI secretion protein  TssB
10Bphyt_49141038722..1040212 [+], 1491187919617EvpB family type VI secretion protein  TssC
11Bphyt_49151040290..1040793 [+], 504187919618type VI secretion system effector, Hcp1 family  TssD
12Bphyt_49161040879..1041358 [+], 480187919619type VI secretion system lysozyme-like protein  TssE
13Bphyt_49171041478..1043316 [+], 1839187919620type VI secretion protein  TssF
14Bphyt_49181043280..1044374 [+], 1095187919621type VI secretion protein  TssG
15Bphyt_49191044410..1047085 [+], 2676187919622type VI secretion ATPase, ClpV1 family  TssH
16Bphyt_49201047140..1048249 [+], 1110187919623type VI secretion-associated protein, ImpA family  TssA
17Bphyt_49211048325..1049287 [-], 963187919624OmpA/MotB domain-containing protein  TagL
18Bphyt_49221049292..1050284 [-], 993187919625type VI secretion-associated protein 
19Bphyt_49231050281..1054147 [-], 3867187919626type VI secretion protein IcmF  TssM
20Bphyt_49241054407..1055048 [-], 642187919627peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
21Bphyt_49251055377..1056312 [+], 936187919628hypothetical protein 
22Bphyt_49261056523..1057665 [+], 1143187919629inosine/uridine-preferring nucleoside hydrolase 
23Bphyt_49271057707..1058663 [-], 957187919630LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bphyt_49151040290..1040793 [+], 504187919618type VI secretion system effector, Hcp1 family BCAL0343

Download FASTA format files
Proteins        Genes
N/A
N/A