SecReT6
I. Summary
SecReT6 ID285 insolico
StrainErwinia tasmaniensis Et1/99
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010694
Location672050..706940
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ETA_06060 (rsmC)667818..668846 [-], 102918853275316S ribosomal RNA m2G1207 methyltransferase 
2ETA_06070 (holD)669022..669441 [+], 420188532754DNA polymerase III subunit psi 
3ETA_06080 (rimI)669404..669844 [+], 441188532755ribosomal-protein-alanine N-acetyltransferase 
4ETA_06090 (yjjG)669859..670539 [+], 681188532756nucleotidase 
5ETA_06100671390..672031 [+], 642188532757hypothetical protein 
6ETA_06110672050..672568 [+], 519188532758lipoprotein  TssJ
7ETA_06120672588..673931 [+], 1344188532759hypothetical protein  TssK
8ETA_06130673949..675190 [+], 1242188532760hypothetical protein  TssL
9ETA_06140675194..678823 [+], 3630188532761hypothetical protein  TssM
10ETA_06150678834..679550 [+], 717188532762hypothetical protein 
11ETA_06160679568..680587 [+], 1020188532763hypothetical protein  TssA
12ETA_06170680650..681186 [+], 537188532764hypothetical protein  TssB
13ETA_06180681190..682692 [+], 1503188532765hypothetical protein  TssC
14ETA_06190682689..682964 [+], 276188532766hypothetical protein 
15ETA_06200683237..683719 [+], 483188532767hypothetical protein  TssD
16ETA_06210683799..684278 [+], 480188532768hypothetical protein  Ssp2 (e)
17ETA_06220684263..684631 [+], 369188532769hypothetical protein 
18ETA_06230685173..685580 [+], 408188532770hypothetical protein 
19ETA_06240685891..686430 [+], 540188532771hypothetical protein 
20ETA_06250686427..686834 [+], 408188532772hypothetical protein 
21ETA_06260686982..688811 [+], 1830188532773Forkhead-associated (FHA) protein  Fha
22ETA_06270688811..689605 [+], 795188532774protein phosphatase 2C-like protein 
23ETA_06280689623..690630 [+], 1008188532775hypothetical protein 
24ETA_06290690640..691461 [+], 822188532776hypothetical protein  TagJ
25ETA_06300691458..692024 [+], 567188532777hypothetical protein  TssE
26ETA_06310692042..693916 [+], 1875188532778hypothetical protein  TssF
27ETA_06320693913..694971 [+], 1059188532779hypothetical protein  TssG
28ETA_06330695013..695741 [+], 729188532780hypothetical protein 
29ETA_06340695773..696093 [+], 321188532781hypothetical protein 
30ETA_06350696188..698803 [+], 2616188532782ClpA/B-type chaperone  TssH
31ETA_06360698833..700239 [+], 1407188532783Serine/threonine protein kinase 
32ETA_06370700286..702910 [+], 2625188532784Rhs element Vgr protein  TssI
33ETA_06380702912..703289 [+], 378188532785hypothetical protein 
34ETA_06390703415..704092 [+], 678188532786hypothetical protein 
35ETA_06400704221..704613 [+], 393188532787hypothetical protein 
36ETA_06410704799..706940 [+], 2142188532788Rhs element Vgr protein subfamily  TssI
37ETA_06420706943..708097 [+], 1155188532789hypothetical protein 
38ETA_06430708090..709343 [+], 1254188532790phospholipase A1 
39ETA_06440709442..710119 [+], 678188532791lipoprotein 
40ETA_06450710098..710526 [+], 429188532792hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA2264

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ETA_06200683237..683719 [+], 483188532767hypothetical protein SMA2263
2ETA_06210683799..684278 [+], 480188532768hypothetical protein SMA2264

Download FASTA format files
Proteins        Genes
N/A
(1) Thapa SP et al. (2013). Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias. Genome. 56(2):83-90. [PudMed:23517317] in_silico
(2) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
(3) Smits TH et al. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity. BMC Genomics. 11:02. [PudMed:20047678] in_silico
 
in_silico This literature contains bioinformatics investigation