SecReT6
I. Summary
SecReT6 ID286 insolico
StrainXanthomonas oryzae pv. oryzae PXO99A
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010717
Location1586899..1620261
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PXO_002731582371..1582553 [-], 183188575801hypothetical protein 
2PXO_002721583130..1585964 [-], 2835188575802hypothetical protein 
3PXO_002711585961..1586890 [-], 930188575803hypothetical protein 
4PXO_002701586899..1589661 [-], 2763188575804Rhs element Vgr protein  TssI
5PXO_002691589955..1590419 [+], 465188575805isrso17-ISXo8 transposase 
6PXO_002681590400..1590993 [+], 594188575806ISXo8 transposase 
7PXO_002671591206..1592174 [-], 969188575807ISXo1 transposase 
8PXO_002661592594..1593046 [+], 453188575808hypothetical protein  TssB
9PXO_00265 (sciI)1593051..1594553 [+], 1503188575809SciI protein  TssC
10PXO_002641594653..1595156 [+], 504188575810hypothetical protein  TssD
11PXO_00263 (impE)1595192..1596025 [+], 834188575811ImpE protein  TagJ
12PXO_002621596013..1596516 [+], 504188575812hypothetical protein  TssE
13PXO_00261 (sciC)1596520..1598397 [+], 1878188575813SciC protein  TssF
14PXO_002601598361..1599371 [+], 1011188575814hypothetical protein  TssG
15PXO_00259 (clpB)1599404..1602109 [+], 2706188575815chaperone ClpB  TssH
16PXO_002581603417..1603668 [+], 252188575816transposase 
17PXO_002571603743..1604201 [+], 459188575817hypothetical protein 
18PXO_002561604466..1606403 [+], 1938188575818Rhs-family protein  TssI
19PXO_002541606412..1606951 [+], 540188575819hypothetical protein 
20PXO_002531606948..1608360 [+], 1413188575820FHA domain-containing protein  Fha
21PXO_00252 (impJ)1608357..1609694 [+], 1338188575821protein ImpJ  TssK
22PXO_00251 (ompA)1609696..1611012 [+], 1317188575822OmpA family membrane protein  TssL
23PXO_00250 (sciS)1611016..1614474 [+], 3459188575823SciS protein  TssM
24PXO_002491614480..1615118 [+], 639188575824hypothetical protein 
25PXO_002481615187..1615837 [+], 651188575825phosphoprotein phosphatase 
26PXO_002471615834..1618737 [+], 2904188575826protein kinase 
27PXO_002461618734..1619060 [+], 327188575827hypothetical protein 
28PXO_002451619233..1620261 [-], 1029188575828ImpA-related N-terminal family  TssA
29PXO_00244 (lysR)1620270..1621217 [-], 948188575829LysR family transcriptional regulator 
30PXO_002431621364..1623796 [-], 2433188575830two-component VirA-like sensor kinase 
31PXO_002421623820..1624812 [-], 993188575831cytochrome C peroxidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A