SecReT6
I. Summary
SecReT6 ID290 insolico
StrainRhizobium etli CIAT 652
Repliconplasmid pB [Browse all T6SS(s) in this replicon]
AccessionNC_010996
Location221483..245495
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RHECIAT_PB0000204216771..216932 [-], 162190894171hypothetical protein 
2RHECIAT_PB0000205217317..217772 [+], 456190894172hypothetical protein 
3RHECIAT_PB0000206218118..218525 [-], 408190894173hypothetical protein 
4RHECIAT_PB0000207218677..218922 [-], 246190894174hypothetical protein 
5RHECIAT_PB0000208218965..219270 [-], 306190894175hypothetical protein 
6RHECIAT_PB0000209219796..220767 [-], 972190894176hypothetical protein 
7RHECIAT_PB0000210221483..223510 [-], 2028190894177hypothetical protein  TssI
8RHECIAT_PB0000211224048..225241 [-], 1194190894178hypothetical protein  TssG
9RHECIAT_PB0000212225238..227124 [-], 1887190894179hypothetical protein  TssF
10RHECIAT_PB0000213227124..227627 [-], 504190894180hypothetical protein  TssE
11RHECIAT_PB0000214227714..228247 [-], 534190894181hypothetical protein  TssD
12RHECIAT_PB0000215228363..229850 [-], 1488190894182hypothetical protein  TssC
13RHECIAT_PB0000216229853..230407 [-], 555190894183hypothetical protein  TssB
14RHECIAT_PB0000217230443..231435 [-], 993190894184hypothetical protein  TssA
15RHECIAT_PB0000218232042..232428 [-], 387190894185hypothetical protein 
16RHECIAT_PB0000219232663..233067 [+], 405190894186hypothetical protein 
17RHECIAT_PB0000220233172..235451 [-], 2280190894187hypothetical protein 
18RHECIAT_PB0000221235454..235999 [-], 546190894188hypothetical protein 
19RHECIAT_PB0000223237798..238064 [-], 267190894189hypothetical protein 
20RHECIAT_PB0000224238008..239363 [+], 1356190894190hypothetical protein  TssK
21RHECIAT_PB0000225239371..240591 [+], 1221190894191hypothetical protein  Fha
22RHECIAT_PB0000226240591..241880 [+], 1290190894192hypothetical protein  TssL
23RHECIAT_PB0000227241890..245495 [+], 3606190894193hypothetical protein  TssM
24RHECIAT_PB0000228245581..245769 [+], 189190894194hypothetical protein 
25RHECIAT_PB0000229245792..247408 [+], 1617190894195hypothetical protein 
26RHECIAT_PB0000230247504..247746 [+], 243190894196hypothetical protein 
27RHECIAT_PB0000232 (syrM)249088..250098 [+], 1011190894197transcriptional regulator protein SyrM 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RbsB

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RHECIAT_CH0002495(rbsBch2)2508726..2509655 [+], 930190892083ribose ABC transporter substrate-binding protein RbsB

Download FASTA format files
Proteins        Genes
N/A
N/A