SecReT6
I. Summary
SecReT6 ID291 insolico
StrainRhizobium etli CIAT 652
Repliconplasmid pC [Browse all T6SS(s) in this replicon]
AccessionNC_010997
Location1022721..1055767
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RHECIAT_PC00009291018006..1018920 [+], 915190895256putative branched-chain amino acid ABC transporter permease 
2RHECIAT_PC00009301018917..1019954 [+], 1038190895257putative branched-chain amino acid ABC transporter permease 
3RHECIAT_PC00009311019976..1020779 [+], 8041908952583-alpha-hydroxysteroid dehydrogenase 
4RHECIAT_PC00009321020804..1022249 [+], 1446190895259putative salicylaldehyde dehydrogenase 
5RHECIAT_PC00009331022721..1025150 [-], 2430190895260hypothetical protein  TssM
6RHECIAT_PC00009341025183..1026082 [-], 900190895261hypothetical protein 
7RHECIAT_PC00009351026088..1026858 [-], 771190895262putative phosphatase 
8RHECIAT_PC00009361026979..1027719 [+], 741190895263hypothetical protein  TagL
9RHECIAT_PC00009371027753..1030485 [-], 2733190895264putative ATP-dependent Clp protease  TssH
10RHECIAT_PC00009381030631..1032724 [+], 2094190895265putative serine/threonine protein kinase 
11RHECIAT_PC00009391032816..1033979 [+], 1164190895266hypothetical protein  TssA
12RHECIAT_PC00009401033976..1034512 [+], 537190895267hypothetical protein  TssB
13RHECIAT_PC00009411034516..1036024 [+], 1509190895268hypothetical protein  TssC
14RHECIAT_PC00009421036045..1036494 [+], 450190895269hypothetical protein  TssD
15RHECIAT_PC00009431036481..1037242 [+], 762190895270hypothetical protein  TssE
16RHECIAT_PC00009441037244..1039118 [+], 1875190895271hypothetical protein  TssF
17RHECIAT_PC00009451039265..1040152 [+], 888190895272hypothetical protein  TssG
18RHECIAT_PC00009461040197..1041417 [+], 1221190895273hypothetical protein  Fha
19RHECIAT_PC00009471041417..1041878 [+], 462190895274hypothetical protein  TssJ
20RHECIAT_PC00009481041896..1043230 [+], 1335190895275hypothetical protein  TssK
21RHECIAT_PC00009491043235..1044560 [+], 1326190895276hypothetical protein  TssL
22RHECIAT_PC00009501044562..1048092 [+], 3531190895277hypothetical protein  TssM
23RHECIAT_PC00009511048074..1048622 [+], 549190895278hypothetical protein 
24RHECIAT_PC00009521048619..1049731 [+], 1113190895279hypothetical protein 
25RHECIAT_PC00009531049728..1050771 [+], 10441908952803-oxoacyl-(acyl carrier protein) synthase 
26RHECIAT_PC00009541050771..1051757 [+], 987190895281hypothetical protein 
27RHECIAT_PC00009551051754..1052683 [+], 930190895282hypothetical protein 
28RHECIAT_PC00009561052674..1053024 [-], 351190895283hypothetical protein 
29RHECIAT_PC00009571053024..1053449 [-], 426190895284hypothetical protein  TssI
30RHECIAT_PC00009581053461..1055767 [-], 2307190895285hypothetical protein  TssI
31RHECIAT_PC00009591055960..1058236 [-], 2277190895286putative glycosyltransferase 
32RHECIAT_PC00009601058301..1058621 [-], 321190895287hypothetical protein 
33RHECIAT_PC00009611058815..1060113 [-], 1299190895288hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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