SecReT6
I. Summary
SecReT6 ID296 insolico
StrainGeobacter bemidjiensis Bem
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011146
Location3500152..3517388
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Gbem_30293496439..3496885 [-], 447197119400hypothetical protein 
2Gbem_30303497140..3497796 [-], 657197119401phosphatase/haloperoxidase, PAP2 superfamily 
3Gbem_30313497899..3498189 [-], 291197119402hypothetical protein 
4Gbem_30323498243..3498986 [-], 744197119403hypothetical protein 
5Gbem_30333499164..3499562 [-], 399197119404hypothetical protein 
6Gbem_30343499583..3500116 [-], 534197119405hypothetical protein 
7Gbem_30353500152..3502203 [-], 2052197119406type VI secretion system VgrG family protein  TssI
8Gbem_30363502250..3503089 [-], 840308535341hypothetical protein 
9Gbem_30373503082..3504188 [-], 1107197119408hypothetical protein 
10Gbem_30383504210..3505241 [-], 1032197119409type VI secretion system protein  TssG
11Gbem_30393505256..3507028 [-], 1773197119410type VI secretion system protein  TssF
12Gbem_30403507036..3507515 [-], 480197119411type VI secretion system lysozyme-like protein  TssE
13Gbem_30413507518..3508015 [-], 498197119412type VI secretion system protein  TssD
14Gbem_30423508028..3509515 [-], 1488197119413type VI secretion system protein  TssC
15Gbem_30433509527..3510057 [-], 531197119414type VI secretion system protein  TssB
16Gbem_30443510082..3511401 [-], 1320197119415type VI secretion system ImpA-like domain-containing protein  TssA
17Gbem_30453511412..3514813 [-], 3402197119416type VI secretion system protein IcmF-like domain-containing protein  TssM
18Gbem_30463514829..3515488 [-], 660197119417type VI secretion system protein  TssL
19Gbem_30473515509..3516903 [-], 1395197119418type VI secretion system protein  TssK
20Gbem_30483516900..3517388 [-], 489197119419lipoprotein  TssJ
21Gbem_3049 (pcmP)3517665..3517862 [+], 198197119420TatA/E family twin-arginine translocation protein 
22Gbem_3050 (mobB)3517912..3518412 [+], 501197119421molybdopterin-guanine dinucleotide biosynthesis protein MobB 
23Gbem_30513518599..3521442 [-], 2844197119422PAS/GAF domain-containing sensor histidine kinase response regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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