SecReT6
I. Summary
SecReT6 ID299 insolico
StrainVibrio fischeri MJ11
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_011184
Location1127127..1145766
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VFMJ11_10711122670..1123419 [+], 750197336058hypothetical protein 
2VFMJ11_10721123607..1125502 [+], 1896197336023sensory box/ggdef family protein 
3VFMJ11_10731125503..1126462 [-], 960197335130serine/threonine protein kinase 
4VFMJ11_10741126459..1127130 [-], 672197335825protein phosphatase 2C 
5VFMJ11_1075 (icmF_1)1127127..1130648 [-], 3522197336290type VI secretion protein IcmF  TssM
6VFMJ11_10761130659..1131492 [-], 834197335286hypothetical protein  TssL
7VFMJ11_10771131494..1132816 [-], 1323197334802type VI secretion protein, family  TssK
8VFMJ11_10781132828..1133319 [-], 492197336156type VI secretion lipoprotein, family  TssJ
9VFMJ11_10791133356..1134666 [-], 1311197335638type VI secretion system FHA domain-containing protein  Fha
10VFMJ11_10801134670..1134798 [-], 129197335802lipoprotein 
11VFMJ11_10811134801..1136369 [-], 1569197335055transcriptional regulator 
12VFMJ11_1082 (clpV_1)1136375..1138957 [-], 2583197334334type VI secretion ATPase, ClpV1 family  TssH
13VFMJ11_10831138954..1139994 [-], 1041197336298type VI secretion protein, family  TssG
14VFMJ11_1084 (vasA_1)1139958..1141709 [-], 1752197334721type VI secretion protein, family  TssF
15VFMJ11_10851141706..1142131 [-], 426197336369type VI secretion system lysozyme-like protein  TssE
16VFMJ11_10861142221..1143696 [-], 1476197335473type VI secretion protein, EvpB/family  TssC
17VFMJ11_10871143700..1144200 [-], 501197334873type VI secretion protein, family  TssB
18VFMJ11_10881144216..1145766 [-], 1551197335960type VI secretion-associated protein, family  TssA
19VFMJ11_10891145989..1146195 [-], 207197335198hypothetical protein 
20VFMJ11_10901146188..1146739 [-], 552197335016primosomal replication protein N' 
21VFMJ11_10911146750..1147520 [-], 771197334287hypothetical protein 
22VFMJ11_1092 (dinG)1147589..1149673 [-], 2085197336182ATP-dependent DNA helicase DinG 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VEPGS_0021

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VFMJ11_14951580072..1580590 [-], 519197335173BfdA VEPGS_0021

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Proteins        Genes
N/A
N/A