SecReT6
I. Summary
SecReT6 ID31 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_004088
Location1692646..1734597
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110111112
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y1526 (yfuA)1687978..1688997 [-], 102022125423iron(III)-binding periplasmic protein 
2y1527 (mltB)1689308..1690420 [+], 111322125424murein hydrolase B 
3y15281691686..1692288 [+], 60322125425hypothetical protein 
4y15291692646..1693128 [-], 48322125426hypothetical protein 
5y15301693125..1694807 [-], 168322125427hypothetical protein  TagL
6y15311694808..1695560 [-], 75322125428hypothetical protein 
7y15321695506..1696843 [-], 133822125429hypothetical protein 
8y15331696883..1697914 [-], 103222125430hypothetical protein 
9y15341697921..1698991 [-], 107122125431hypothetical protein  TssA
10y15361699201..1700262 [-], 106222125432hypothetical protein  TssG
11y15351699474..1699692 [+], 21922125433hypothetical protein 
12y15371700226..1702106 [-], 188122125434hypothetical protein  TssF
13y15381702814..1705564 [+], 275122125435Clp ATPase  TssH
14y15391705756..1706310 [+], 55522125436frimbrial protein 
15y15401706307..1706588 [-], 28222125437hypothetical protein 
16y1541 (ecpD)1706449..1707228 [+], 78022125438pilin chaperone 
17y15421708928..1710136 [-], 120922125439transposase 
18y15441711336..1711944 [+], 60922125440fimbrial protein 
19y15451712028..1712573 [+], 54622125441hypothetical protein  TssB
20y15461712576..1714099 [+], 152422125442hypothetical protein  TssC
21y15471714341..1714910 [+], 57022125443hypothetical protein  TssD
22y15481715124..1715723 [+], 60022125444hypothetical protein  TssJ
23y15491715727..1717076 [+], 135022125445hypothetical protein  TssK
24y15501717755..1718777 [+], 102322125446transposase 
25y15511718774..1719556 [+], 78322125447transposase/IS protein 
26y15531720666..1724244 [+], 357922125448hypothetical protein  TssM
27y15551724538..1727123 [+], 258622125449hypothetical protein  TssI
28y15541726535..1727032 [-], 49822125450hypothetical protein 
29y15561726636..1727175 [-], 54022125451hypothetical protein 
30y15571727222..1727482 [+], 26122125452hypothetical protein  PAAR
31y15591727482..1728330 [+], 84922125453hypothetical protein 
32y15581727575..1727763 [-], 18922125454hypothetical protein 
33y15601728350..1729156 [+], 80722125455hypothetical protein  TagJ
34y15611729285..1729764 [+], 48022125456hypothetical protein  TssE
35y15621729771..1730136 [+], 36622125457hypothetical protein 
36y1563 (phnA)1730211..1730552 [-], 34222125458hypothetical protein 
37y15641730928..1733027 [-], 210022125459hypothetical protein 
38y15651732972..1733523 [-], 55222125460hypothetical protein 
39y15661734091..1734597 [+], 50722125461hypothetical protein 
40y1567 (ccmA)1735042..1735698 [+], 65722125462cytochrome c biogenesis protein CcmA 
41y1568 (ccmB)1735641..1736327 [+], 68722125463heme exporter protein B 
42y1569 (ccmC)1736390..1737127 [+], 73822125464heme exporter protein C 
43y1570 (ccmD)1737124..1737426 [+], 30322125465heme exporter protein D 
44y1571 (ccmE)1737423..1737917 [+], 49522125466cytochrome c-type biogenesis protein CcmE 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1y15471714341..1714910 [+], 57022125443hypothetical protein ROD_27741

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation