SecReT6
I. Summary
SecReT6 ID310 insolico
StrainEscherichia coli SE11
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011415
Location241683..265321
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECSE_0209236792..237514 [+], 723209917400hypothetical protein 
2ECSE_0210 (rnhA)237511..237978 [-], 468209917401ribonuclease H 
3ECSE_0211238043..238774 [+], 732209917402DNA polymerase III subunit epsilon 
4ECSE_0212239314..240099 [+], 786209917403putative aminopeptidase 
5ECSE_0213240725..241639 [-], 915209917404hypothetical protein 
6ECSE_0214241683..242165 [-], 483209917405hypothetical protein  TssD
7ECSE_0215242189..243541 [-], 1353209917406hypothetical protein  TssA
8ECSE_0216243552..247076 [-], 3525209917407hypothetical protein  TssM
9ECSE_0217247095..248507 [-], 1413209917408hypothetical protein  TssA
10ECSE_0218248512..249204 [-], 693209917409hypothetical protein 
11ECSE_0219249252..252215 [-], 2964209917410ATP-dependent chaperone protein ClpB  TssH
12ECSE_0220252224..252985 [-], 762209917411hypothetical protein  TssL
13ECSE_0221252990..254321 [-], 1332209917412hypothetical protein  TssK
14ECSE_0222254324..254848 [-], 525209917413putative lipoprotein  TssJ
15ECSE_0223254845..256125 [-], 1281209917414hypothetical protein  Fha
16ECSE_0224256150..257232 [-], 1083209917415hypothetical protein  TssG
17ECSE_0225257196..259046 [-], 1851209917416hypothetical protein  TssF
18ECSE_0226259050..259463 [-], 414209917417hypothetical protein  TssE
19ECSE_0227259470..260945 [-], 1476209917418hypothetical protein  TssC
20ECSE_0228260996..261220 [-], 225209917419hypothetical protein  TssC
21ECSE_0229261255..261755 [-], 501209917420hypothetical protein  TssB
22ECSE_0230261770..261898 [+], 129209917421hypothetical protein 
23ECSE_0231262182..262325 [+], 144209917422hypothetical protein 
24ECSE_0232262452..262970 [+], 519209917423hypothetical protein  TssD
25ECSE_0233263180..265321 [+], 2142209917424hypothetical protein  TssI
26ECSE_0234265397..269632 [+], 4236209917425Rhs core protein  PAAR
27ECSE_0235269616..270098 [+], 483209917426hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECSE_0232262452..262970 [+], 519209917423hypothetical protein ECA4275

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Proteins        Genes
N/A
N/A